Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2682 ATGGGTTTGAGTTCTAAGCAGGTTTCTAATAGAGGACTTGATTGGAACCAGACCTTGTTGGAGGCTCAAAACTTGGAGCTCCCAAAGCCTCCTCCTATGAGGAAACAACAGCAACAAACTCAGCCATCAGAGCCTTTGAAGTGTCCAAGATGTGACTCTATTAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTACTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGGAAGAATAAGCGAGTCAAGAAATCAACCACTCCAAACACAGCCACGGCCACAAATTCTATTAGCACCACCACCACCACCTCAAATACCAACATGGATGGTGAGTTGAATACCCCCATCACAATTCCTCTTTTTGCAGTGGATGATCACAAAACCACACCTTCCTCTCTCTACCAATCCTTGTGCCTGCCACAACAGAATCTGATGATGAGTACCAAAGACTCAGAAGAAGGCAAAGACTTTGGTATTGGTAATGGCATCTTTCTCAGTTCAACTGTGCCTTTTCCTCAAAGTCAAAGCCTTCTCTTCCCCTTCACAACATCAAACTCCTTTGACACAAACCAATGTGCAATATCGTCCTCTTTGCGATCCTCCAGTGTGTATAACTATGGTGAAGAGTTCAAAATAACGGAGGAGCCAACCATCAACAGCATAATGCCCAACGCTAGCGGAGGCACCAACACACAGCCATGGGAGATAGCTGCAACAAGTTCTGGCTTGGAAATGTCAAACTATTGGACTTGGGAGGACATTGATTCCTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCCTGA 876 0.4498 MGLSSKQVSNRGLDWNQTLLEAQNLELPKPPPMRKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTPNTATATNSISTTTTTSNTNMDGELNTPITIPLFAVDDHKTTPSSLYQSLCLPQQNLMMSTKDSEEGKDFGIGNGIFLSSTVPFPQSQSLLFPFTTSNSFDTNQCAISSSLRSSSVYNYGEEFKITEEPTINSIMPNASGGTNTQPWEIAATSSGLEMSNYWTWEDIDSLVSTDLNVPWDDSDIKP* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2682 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 215 IPR045174 GO:0003700|GO:0006355
Gso11g2682 291 MobiDBLite consensus disorder prediction 87 129 - -
Gso11g2682 291 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Gso11g2682 291 PANTHER OS06G0284500 PROTEIN 28 215 - -
Gso11g2682 291 MobiDBLite consensus disorder prediction 25 47 - -
Gso11g2682 291 MobiDBLite consensus disorder prediction 103 129 - -
Gso11g2682 291 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
Gso11g2682 291 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2682 Gso-Chr11 42771795 42773945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2682 44 117 C2C2-Dof Transcription Factor Family AT5G60850 64.000 2.06e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g2682 zf-Dof 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2682 - - gmx:778119 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0613 15 5466076 5468415 Gso11g2682 11 42771795 42773945 GST
Gso7g1644 7 38424534 38426512 Gso11g2682 11 42771795 42773945 PCT
Gso11g2682 11 42771795 42773945 Gso7g1644 7 38424534 38426512 PCT