Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2642 ATGGAGCAACGAGTTGGAGAAGGAGGTGGCATGAACAAGCAACCTCGAGATTCAAGAGTGAAGGAGATTCAACAAGGTGATGCACAAGTTCATGCTCAGGCTCCTCAACAACCCCAAAAATGTCCTCGATGTGACTCTCTCAACACCAAATTTTGCTACTACAACAACTACAGCCTGTCACAGCCTCGTTACTTTTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTGAGGAACGTTCCTGTTGGTGGCGGTTGCCGCAAGGGGAAGCGAGCCAAGACTTCTAACTCATCATCTTCATCGGAGAATATAAATTCTTCTTTCCGGTCACTTCCTCTACAACAACCGCAAGGGATGGTGGTTCAAACTCAAGCACCACCCTTAACATCGGTAGTGAAGGCTAAAGACCCTTCTTCAGTTGTGGCTTCACCCTTTTACCAAAGTGGTGGATACTTGTCTTCTTTGGCTGCTATGCATTCACTCAACCCGTCATCATCACACCCTTTTGATCAGTCTCTAAATGTTATTGCGGGGAGTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTATCTGGTTTCAATGTTCAGCGCCCAATTGGGCAAATTTGTCCACCGTACTTGTATCATCAAATGGGGAGTGATGAAAGGGAGATGGTGTCTCTGTATGAACAAGGTTTGGTTAATCCATCTTCATCCAGCATGGCTAATACTAATACTAATACTAATGGCAGTGGTGTTTCTCAGCATGATTGGCCTCAGAGCTTCATCAATAATAATGTTAGTAATAGAGCCTCTGATGCCTCTTTGTGGAGCACCATCAGCACCACTATTGGTGGTAACTCTGAGAGGACTAGTACTAGTGGTGTTGGTGTTGATGTTGGTGCTGGTTCTTCTTCTTTCGTCACGAATCAATGGCCTAATCTTCCAGGGTATGGTCCTCCACCGTGA 954 0.4602 MEQRVGEGGGMNKQPRDSRVKEIQQGDAQVHAQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKTSNSSSSSENINSSFRSLPLQQPQGMVVQTQAPPLTSVVKAKDPSSVVASPFYQSGGYLSSLAAMHSLNPSSSHPFDQSLNVIAGSDALRSSNLGLLSGFNVQRPIGQICPPYLYHQMGSDEREMVSLYEQGLVNPSSSSMANTNTNTNGSGVSQHDWPQSFINNNVSNRASDASLWSTISTTIGGNSERTSTSGVGVDVGAGSSSFVTNQWPNLPGYGPPP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2642 317 MobiDBLite consensus disorder prediction 232 256 - -
Gso11g2642 317 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 10 316 - -
Gso11g2642 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 316 IPR045174 GO:0003700|GO:0006355
Gso11g2642 317 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gso11g2642 317 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gso11g2642 317 MobiDBLite consensus disorder prediction 84 109 - -
Gso11g2642 317 MobiDBLite consensus disorder prediction 1 39 - -
Gso11g2642 317 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Gso11g2642 317 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2642 Gso-Chr11 42395233 42397587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2642 12 101 C2C2-Dof Transcription Factor Family AT5G60200 62.222 1.99e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g2642 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2642 - - gmx:102668884 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0653 15 5817495 5819795 Gso11g2642 11 42395233 42397587 GST
Gso7g1685 7 38896599 38898072 Gso11g2642 11 42395233 42397587 PCT
Gso11g2642 11 42395233 42397587 Gso7g1685 7 38896599 38898072 PCT