Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2641 ATGTCGGCTAACTGTGAGAAAATGGTAGCCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGGTTCCAACGGTGGAAGTAGTAACAACAACAATAATAAGGTATTGGAAAAACCAGGTCAAGATCAGCTTGTGCAGCAGCAGCAACAACAACAAGAAGCCCCCAAGTGCCCTCGTTGTGACTCATCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCACGGCACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACTCTCAGAAACGTTCCTGTTGGTGGAGGCTGCAGAAGAAACAAGCGTGTCAAGCGTCCATTAATAACGACAAACCCTTCTTCTGCTGCCATTGACACTGCTGCTTCTAATAATTCTTCTAACTCTTCTTCTGCTCCACTACAACCCCCGATCGACACTGCTTCAACCTCAAATCACATCAACCCTTTGTTTTATGGCTTACCAAGTAGCTCTAGCGATGTGAATCTTCCATTGTTCTCTAGGTTCGGTTCTAGAATCTCCAGCTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTTTGTCCAATGAAGCTAGTGATAATAACGGTTACAGAAACTGGTTTGGTTCAAACAATACGCTTCTTTCAAGTTATACATCCACCACTAGTACTACTACTCCAGCTATGTCTTCTCTTTTGAGCTCTTCTTTGCTTCAACAGAAGTTCATGACAGATGGTGTTGATAGCACCAACACTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCAGTTGCAAATGGCAAGTGATCATAGCAGTGAGGCAGGGATGGTGGCCTTAAAAGACGTGAAAGTAGAATTAGGACAAAACAACAGGTTGGAGTGGAATAATGGTGCTGCTTGCCAAAGCCAGATCCAGCATGTGGGCTTGTACGATCCTTCTCTTTATTGGAATAATTCAGCGGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCTAATATTGGTTCATCAGTCACTTCTCTGATCTAG 1074 0.4507 MSANCEKMVAIPPTTNQWPQVDDHKVLMGSNGGSSNNNNNKVLEKPGQDQLVQQQQQQQEAPKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRVKRPLITTNPSSAAIDTAASNNSSNSSSAPLQPPIDTASTSNHINPLFYGLPSSSSDVNLPLFSRFGSRISSSGFDLQLNNALGLGFSSGVLSNEASDNNGYRNWFGSNNTLLSSYTSTTSTTTPAMSSLLSSSLLQQKFMTDGVDSTNTFQHGLGLTPLEQLQMASDHSSEAGMVALKDVKVELGQNNRLEWNNGAACQSQIQHVGLYDPSLYWNNSAATALGVWNDQAANIGSSVTSLI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2641 357 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Gso11g2641 357 MobiDBLite consensus disorder prediction 125 153 - -
Gso11g2641 357 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 3 340 - -
Gso11g2641 357 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Gso11g2641 357 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 340 IPR045174 GO:0003700|GO:0006355
Gso11g2641 357 Pfam Dof domain, zinc finger 60 116 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2641 Gso-Chr11 42383122 42385376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2641 63 357 C2C2-Dof Transcription Factor Family AT1G28310 40.673 1.47e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g2641 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2641 - - gmx:778098 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0654 15 5834082 5836213 Gso11g2641 11 42383122 42385376 GST
Gso7g1686 7 38904521 38909368 Gso11g2641 11 42383122 42385376 PCT
Gso11g2641 11 42383122 42385376 Gso7g1686 7 38904521 38909368 PCT