Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2327 ATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGCGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGTGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGA 915 0.4361 MPGKADTDDWRVERGEQIQFQSSIYSHHQPWWCGVGENASKSSSADQLNGSIVNGITRSETNDKSGEGVAKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTSPYSDAQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKKLENYNSDATSDIGQNTGANPSTNSPNTQHLFTNNENLGSSNASQATVQDMHRVESFNIGYHNGNGLAELYHSQANGKKEGNCFGKERDPNNGAFK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2327 304 Gene3D - 147 208 - -
Gso11g2327 304 SMART cbf3 146 207 IPR001289 GO:0003700|GO:0006355
Gso11g2327 304 MobiDBLite consensus disorder prediction 215 253 - -
Gso11g2327 304 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 297 IPR001289 GO:0003700|GO:0006355
Gso11g2327 304 ProSitePatterns NF-YA/HAP2 subunit signature. 152 172 IPR018362 GO:0003677|GO:0016602
Gso11g2327 304 ProSiteProfiles NF-YA/HAP2 family profile. 147 207 IPR001289 GO:0003700|GO:0006355
Gso11g2327 304 PRINTS CCAAT-binding transcription factor subunit B signature 150 172 IPR001289 GO:0003700|GO:0006355
Gso11g2327 304 PRINTS CCAAT-binding transcription factor subunit B signature 181 204 IPR001289 GO:0003700|GO:0006355
Gso11g2327 304 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 149 204 IPR001289 GO:0003700|GO:0006355
Gso11g2327 304 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 23 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2327 Gso-Chr11 39212950 39219321 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso11g2327 CBFB_NFYA 1.3e-26 No_clan