Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2318 ATGGGGAAGATAGAAAAAAACAAAAACACCTTATTGACACCACCTTTTCTATCATCCTTCAAGTCATCATCTTTGATGATGCCCATCCTCCTGGTCATTCTCTTGGCCTTGTTTTCTCCTTCATTAGGCCTTCCTTTAGCATCTTTCCAACCAAAAGACAATTTCCTCATTGATTGTGGTGCTGAAAACACAGCCACTCTCCCTGATGGAAGACATTTCAAATCAGACCCTCAATCCAGATCCTTCTTGCAAGCCAATGATGAGTACAAAGTCTCAGCAAATGATGTGAATTTGCCTTCACCTGTTTACTCAAATGCAAGGATCTTCATTCAGGAAGCCAAGTACTCCTTCCATTTGGTTCAACCAGGTTTCCATTGGATCCGGCTTCACTTCTACCCCATCAAGAACAACATCTTTGATCTTCAGAAGGCAACTTTTTCTGTCTACACAGACACCTATGTGCTCCTCCACAGCTTCAATGTGAACAACACTGACAAGCCAATCATGAAGGAGTACCTAATCAATGCAACTGAGCCACAATTGACCATGTCCTTCATTCCCTTGAAGAATTCAGCTGCATTCATCAATGCCATAGAGGTTGTCTCAGCTCCTGATAACCTGATATTCGACACCGGAGCCGGCCTTTTCCCCGTTGGCGAGATCGGAGGCCTGACCACTTATGGCTTCCAGCCTGTTTACAGGGTGAACAATGGAGGGCCTCTGATCACCTCATCAAATGACACCCTTGGAAGGACTTGGGAATCTGATGAGCATTTCCTCACAAACAAGAACTTGGCCAAGAGTGCCTCGGTGGCAACCTCTGCTGTTAAGTTCCCTCAAGACAATCCTTCCATCTCTCCCATGATTGCACCACAAACTGTGTATGCCTCTGCCACTGAGATGGGTGATGCTGGTGTCAATCAGCCAAATTTCAATGTGTCATGGAAATTTGATGTGGACACCTCTTTTGGCTACCTTGTTAGGCTGCACTTCTGTGACATTGTTAGCAAAGGCCTCAATGAGCTCTACTTCAATGTTTATGTTAATGGGAAAGTGGCAATCAATAACTTGGATTTATCAGCCATCACTGGTGCCTTGTCAACACCATACTACAAAGACATTGTGGTGAATGCAACATTGATGTCTGAGGGGCTAACGGTTCAGGTTGGTCCAGCAAATGCTGATGGTGGAAATGCCAATGCAATTATGAATGGCATAGAGGTCTTGAAGATGAGCAACTCTGTCAACAGTTTGGATGGGGAATTTGGTGTTGATGGAAGAAGTGTTAGTGGTTCTAACCGCGGCACGGTGGCAGCGGTTGGATTTGCCATGATGTTTGGAGCATTTGTGGGTCTTGGTGCCATGGTGATCAAGTGGCACAAGAGGCCTCAAGACTGGCAAAAGAGGAATAGTTTCTCTTCATGGTTGCTTCCTCTGCACGCCGGTGACACCAGCTTCATGAGCAAGAACTCAATGGGAAAGAGCAACTTCTTCTCCTCGTCGATGGGATTAGGCCGGTACTTCTCCTTCGCGGAACTTCAGGAAGCAACCAAGAACTTTGACTCCAAGAACATAATTGGTGTTGGTGGATTTGGGAATGTGTATTTGGGTGTGATTGATGAGGGGACTCAAGTGGCAGTGAAGAGAGGAAACCCTCAATCAGAACAAGGCATCACAGAGTTCCAAACAGAAATCCAAATGCTTTCAAAGCTAAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATCTTGGTTTATGAGTACATGCCTAATGGTCACTTCAGAGACCATCTTTATGGAAAGAACTTGCCTGCTCTCTCATGGAAGCAAAGGCTAGATATCTGCATTGGATCGGCCCGCGGACTTCACTACCTTCACACCGGAACAGCTCAAGGCATAATTCACCGTGATGTCAAGACCACTAACATTTTGCTTGATGAGAATTTCACGGCCAAGGTTTCTGATTTTGGTCTTTCAAAGGACGCGCCAATGGGGCAGGGTCATGTTAGCACTGCTGTCAAGGGTAGCTTTGGTTATCTTGACCCTGAGTACTTCAGGAGGCAGCAACTGACTGAAAAGTCTGATGTGTACTCATTTGGGGTGGTTCTGCTTGAGGCACTGTGTGCAAGACCAGCCATCAACCCTCAGTTGCCCCGTGAACAAGTTAACTTGGCCGATTGGGCGATGCAATGGAAGAGGAAGGGCCTTCTTGACAAGATCATTGACCCTCTCTTAGTTGGTTGCATCAATCCTGAATCCATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCTGATCATGGTGTGGATAGGCCTTCAATGGGGGATGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGGAAAGCCTGAGGATGAGTCCAAGTCAGCATCAGCAGCTGTTCCTACTTCACCAACACCTCCTACTCCTTCCGATGATCGCCCGGCAGCTCCGGCTGTGCCTGCACGTCCGGAAGCAGCGAATAATGCTTCATCAGAAGTGAATTCTATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAGCAATCTCAATGGTAGGTGA 2610 0.4648 MGKIEKNKNTLLTPPFLSSFKSSSLMMPILLVILLALFSPSLGLPLASFQPKDNFLIDCGAENTATLPDGRHFKSDPQSRSFLQANDEYKVSANDVNLPSPVYSNARIFIQEAKYSFHLVQPGFHWIRLHFYPIKNNIFDLQKATFSVYTDTYVLLHSFNVNNTDKPIMKEYLINATEPQLTMSFIPLKNSAAFINAIEVVSAPDNLIFDTGAGLFPVGEIGGLTTYGFQPVYRVNNGGPLITSSNDTLGRTWESDEHFLTNKNLAKSASVATSAVKFPQDNPSISPMIAPQTVYASATEMGDAGVNQPNFNVSWKFDVDTSFGYLVRLHFCDIVSKGLNELYFNVYVNGKVAINNLDLSAITGALSTPYYKDIVVNATLMSEGLTVQVGPANADGGNANAIMNGIEVLKMSNSVNSLDGEFGVDGRSVSGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSKNSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNLPALSWKQRLDICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPLLVGCINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKPEDESKSASAAVPTSPTPPTPSDDRPAAPAVPARPEAANNASSEVNSIDDHSGTAMFAQFSNLNGR* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2318 869 SMART serkin_6 520 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2318 869 MobiDBLite consensus disorder prediction 817 831 - -
Gso11g2318 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Gso11g2318 869 PANTHER BNAC03G60370D PROTEIN 39 846 - -
Gso11g2318 869 MobiDBLite consensus disorder prediction 842 856 - -
Gso11g2318 869 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Gso11g2318 869 MobiDBLite consensus disorder prediction 799 856 - -
Gso11g2318 869 Gene3D Transferase(Phosphotransferase) domain 1 596 815 - -
Gso11g2318 869 Gene3D Phosphorylase Kinase; domain 1 482 595 - -
Gso11g2318 869 Pfam Malectin-like domain 57 410 IPR024788 -
Gso11g2318 869 Gene3D - 230 413 - -
Gso11g2318 869 Gene3D - 54 204 - -
Gso11g2318 869 ProSiteProfiles Protein kinase domain profile. 520 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2318 869 PANTHER OS07G0166700 PROTEIN 39 846 IPR045272 GO:0004714|GO:0006468
Gso11g2318 869 CDD STKc_IRAK 526 790 - -
Gso11g2318 869 Pfam Protein tyrosine and serine/threonine kinase 523 718 IPR001245 GO:0004672|GO:0006468
Gso11g2318 869 SUPERFAMILY Protein kinase-like (PK-like) 503 787 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2318 Gso-Chr11 39118027 39121153 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso11g2318 Malectin_like 2.7e-37 CL0202