Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2294 ATGTCTATACAACATGAAAATCCTGAGACAAAAGATGTAATATGTCCACAGAAAAGGATAGCAGATCTTATGCATCACGCTGGAAACAAGTTTTGCGCTGATTGTGGAACACCAGAGCCAAGATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAGTTGGGTGGCAATACATTATTAAATAAGAAGTACGAAGCTTGCCTTCCAAGTAACATAAGAAAACCAAAACCACATTCATCCATTGAGGAGCGCTCTGAATTTATTCGGAGAAAATATGAGATGCAGCAATTTGTCGACTGTGATGACAATTTGTCATGCCCCATTATCCCATCTCAAGGAAGAAGCATATCACTTGCTCTTGCTCAGAGTAGCACTTCATACTACAATTCTTTTATGGACAAGAAACCATCTGAAAAACAACAAAGCAAACATCGTATTGGGAACGCATTCCGAAACAGCTGGGGAAGAAAAGATTCTGAGCACAAGGCTGCAAAGAAGAGTACCTCTTTGGCAGGTATGGTTGAATTTGTTGGGCTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCATTCGAGATGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGTGTCATAAAGAGCAATTTGAATCCGGTTTGGAATGAGAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGGGAGGCTGAAATAGACATTCAACCTCTAGTTATTGCCGCAAAGGCCTACGAGAAATCGAATATTAATGAGTCCATGCAACTTGGGAAATTTGTAGCAAGCAACGACAACACCCTTGTTAGAGATGGTATCATATCTCTTGATGAAGGGAAAATCAAACAGGAAATCTCAGTTAGGCTACAAAATATTGAGAGGGGTGAGTTGGAGCTTGAGCTTGAGTGTGTTCCCCTTACTCAATAG 1107 0.4011 MSIQHENPETKDVICPQKRIADLMHHAGNKFCADCGTPEPRWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNIRKPKPHSSIEERSEFIRRKYEMQQFVDCDDNLSCPIIPSQGRSISLALAQSSTSYYNSFMDKKPSEKQQSKHRIGNAFRNSWGRKDSEHKAAKKSTSLAGMVEFVGLIKVNVVKGTHLAIRDVMTSDPYVILSLGHQSVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASNDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2294 368 CDD ArfGap 20 126 - -
Gso11g2294 368 Pfam C2 domain 213 299 IPR000008 -
Gso11g2294 368 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 209 303 IPR035892 -
Gso11g2294 368 ProSiteProfiles C2 domain profile. 195 310 IPR000008 -
Gso11g2294 368 Gene3D C2 domain 211 368 IPR035892 -
Gso11g2294 368 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Gso11g2294 368 Gene3D Arf GTPase activating protein 3 138 IPR038508 -
Gso11g2294 368 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 15 368 IPR044518 GO:0005096|GO:0005543
Gso11g2294 368 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Gso11g2294 368 SMART C2_3c 213 308 IPR000008 -
Gso11g2294 368 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 15 368 - -
Gso11g2294 368 CDD C2_ArfGAP 211 355 - -
Gso11g2294 368 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Gso11g2294 368 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Gso11g2294 368 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Gso11g2294 368 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Gso11g2294 368 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2294 Gso-Chr11 38850462 38856488 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1975 15 44452608 44464926 Gso11g2294 11 38850462 38856488 GST
Gso4g1143 4 20751297 20771794 Gso11g2294 11 38850462 38856488 PCT
Gso11g2294 11 38850462 38856488 Gso4g1143 4 20751297 20771794 PCT