Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2288 ATGGTTTTGATTGGGAATCATAACCAATTTGTTGATAGTCTGTGTGCATTTGTGGTCAAGGGTCACTGGGGCGATCTGTCAAAGGTGAAGAATGTTTCTGCTCTCACTTCCTCTACCATTCACCAGGTACTATTGCAGCTCTCACTCTATGGTTATGGGCTCTCTTATTCCTTCCCATTCTTCAAATGGCTTGACTCCATCCCACATTATAGCCATTCCTTGCAATGTTCATGGGCCATGATTCACATCCTTACCGAACATAAGCATTTCAAAACTGCACAACACATGCTTGAAAAAATTGCTCACAAGGATTTTCTTTCATCCCCTTCAGTTTTGACCACTTTGGTGAGGACTCATGACAACCAGGAAGTTAATTCTCAAGTGCTGAGCTGGCTTGTCATACATTATGCCAAGTCAAAGATGACACAGGATGCAATTCAAGTTTTTGAGCAGATGAGGTTGCATGAAGTCAAACCTCATTTGCATGCTTGTACTGTTCTTTTGAATTCCTTGTTGAAGGATGGGGTTACTCACATGGTGTGGAAAATTTACAAGAAAATGGTTCAAGTTGGGGTTGTTCCCAATACATACATTTACAATTGTTTATTCCATGCTTGTTCAAAAGCAGGAGATGTGGAAAGGGCAGAACAGTTATTAAATGAGATGGATGTAAAGGGTTTGCTTCCTGATATCTTCACATACAATACTTTGATATCGTTATATTGCAAGAAAGGTATGCATTATGAGGCTTTATCCATCCAGAACAGAATGGAAAGAGAGGGGATAAACCTTGATATTGTTAGTTATAACTCTCTTATTTATCGATTTTGCAAAGAAGGCAGGATGAGAGAAGCTATGAGGATGTTTAGTGAAATAAAAAATGCAACTCCCAATCATGTGACATATACTACATTGATTGATGGTTATTGTAAAACAAATGAACTGGAAGAAGCTTTGAAAATGCGTGAAATGATGGAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTTTAATTCAATTTTGCGCAAGCTGTGCCAAGATGGCAGGATAAGGGATGCAAACAAACTCTTGAATGAGATGAGTGAAAGGAAAATTCAAGCTGACAATATCACATGCAACACACTAATTAATGCTTACTGCAAGATTGGAGATTTGAAATCAGCTTTGAAATTTAAGAACAAGCTGTTAGAAGCTGGTCTAAAACCTGATCCATTTACATATAAGGCACTGATTCATGGGTTCTGCAAGACGAATGAACTAGAAAGGGCAAAGGAGTTAATGTTCAGCATGCTTGATGCTGGATTTACCCCCAGTTATTGCACATACTCATGGATTGTAGATGGCTACAATAAGAAAGACAATATGGATGCAGTTTTAGCACTTCCAGATGAGTTTCTGAGTAGAGGTCTTTGTCTTGATGTTTCAGTATACAGGGCATTGATAAGAAGGTCATGCAAGGTAGAAAGGGTTGAATGTGCTGAAAGGTTATTCAATCATATGGAAGGAAAGGGTATATCAGGTGAAAGTGTTATCTACACCAGTCTTGCATATGCTTATTGGAAAGCGGGGAATGTACGAGCTGCCTCAAGTATGCTAGAAGAGATGGCTAGGAGAAGCATATTGGGATGA 1629 0.391 MVLIGNHNQFVDSLCAFVVKGHWGDLSKVKNVSALTSSTIHQVLLQLSLYGYGLSYSFPFFKWLDSIPHYSHSLQCSWAMIHILTEHKHFKTAQHMLEKIAHKDFLSSPSVLTTLVRTHDNQEVNSQVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKKMVQVGVVPNTYIYNCLFHACSKAGDVERAEQLLNEMDVKGLLPDIFTYNTLISLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYRFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDGYCKTNELEEALKMREMMEAKGLYPGVVTFNSILRKLCQDGRIRDANKLLNEMSERKIQADNITCNTLINAYCKIGDLKSALKFKNKLLEAGLKPDPFTYKALIHGFCKTNELERAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGLCLDVSVYRALIRRSCKVERVECAERLFNHMEGKGISGESVIYTSLAYAYWKAGNVRAASSMLEEMARRSILG* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Gso11g2288 542 Gene3D Tetratricopeptide repeat domain 257 324 IPR011990 GO:0005515
Gso11g2288 542 Gene3D Tetratricopeptide repeat domain 187 256 IPR011990 GO:0005515
Gso11g2288 542 Gene3D Tetratricopeptide repeat domain 395 465 IPR011990 GO:0005515
Gso11g2288 542 Gene3D Tetratricopeptide repeat domain 25 186 IPR011990 GO:0005515
Gso11g2288 542 Gene3D Tetratricopeptide repeat domain 466 539 IPR011990 GO:0005515
Gso11g2288 542 Gene3D Tetratricopeptide repeat domain 325 394 IPR011990 GO:0005515
Gso11g2288 542 Pfam PPR repeat family 332 381 IPR002885 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Gso11g2288 542 Pfam PPR repeat 294 326 IPR002885 -
Gso11g2288 542 Pfam PPR repeat 468 501 IPR002885 -
Gso11g2288 542 Pfam PPR repeat 399 427 IPR002885 -
Gso11g2288 542 PANTHER ATPASE EXPRESSION PROTEIN 3 6 540 - -
Gso11g2288 542 Pfam PPR repeat 510 539 IPR002885 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 476 506 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 267 293 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 405 438 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Gso11g2288 542 TIGRFAM PPR: pentatricopeptide repeat domain 197 231 IPR002885 -
Gso11g2288 542 Pfam Pentacotripeptide-repeat region of PRORP 126 284 IPR033443 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Gso11g2288 542 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 540 - -
Gso11g2288 542 SUPERFAMILY TPR-like 237 531 IPR011990 GO:0005515
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Gso11g2288 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2288 Gso-Chr11 38791422 38797252 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1970 15 44300061 44305732 Gso11g2288 11 38791422 38797252 GST