Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2226 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCTGATGAGGATGTTGGAAAGATAGCACTCGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGGGTTCCTGACTACAGCCATGGCCATGGCCATGCTGAGGCTGGTCCTGATGATCGGGCCATTGCAAAAAGAAGGAAAGCTGTTGGTGATGATGGTAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCATGAGTTGGGCCACACTGGCAGTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTTTAAATAGAGAGATATATCATCAGGATGCTGAATCTGAGCCTTGCACTTCTGTTCAGCCAAGCAACCCACAAAATACAAACACAAGTGTTGCAATGGATAGTGGTTCTGAGTCAAAGGAAATACCAAAGGAGCAGAACATTGCAGTTCCTGTTGAAAGCACTGATTCGCTCCGGAACATCGATCTGAATGCCATTACGAATGAAAATGATGACAAAAAGGCTAGCGCAGCAGCGGATGCCTCTGTGCCTGAACCTGATGCCTCTGTGCCTGAACCTCCAACAGAGAGCAAGCATGAAGAAATTCCAGGGTGGTCTCTTTCTGATGTGGACAAGATGGCCATTGATTCGCTGCAGCTTGCACAACTTGGTAGGCCACTAGAAGAGGATGAAGAAGACTATGATGAAGAGGAGGGGTAA 885 0.4644 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYSHGHGHAEAGPDDRAIAKRRKAVGDDGNDSDEEAKRSKMHELGHTGSTGRGRGRGRGRGRGRGRPPLNREIYHQDAESEPCTSVQPSNPQNTNTSVAMDSGSESKEIPKEQNIAVPVESTDSLRNIDLNAITNENDDKKASAAADASVPEPDASVPEPPTESKHEEIPGWSLSDVDKMAIDSLQLAQLGRPLEEDEEDYDEEEG* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2226 294 MobiDBLite consensus disorder prediction 205 220 - -
Gso11g2226 294 MobiDBLite consensus disorder prediction 111 294 - -
Gso11g2226 294 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Gso11g2226 294 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 292 - -
Gso11g2226 294 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Gso11g2226 294 SUPERFAMILY Histone-fold 4 99 IPR009072 GO:0046982
Gso11g2226 294 PANTHER HISTONE SUPERFAMILY PROTEIN 1 292 - -
Gso11g2226 294 MobiDBLite consensus disorder prediction 111 137 - -
Gso11g2226 294 MobiDBLite consensus disorder prediction 247 261 - -
Gso11g2226 294 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2226 Gso-Chr11 37963862 37972769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2226 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.502 1.37e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso11g2226 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1911 15 42181281 42189216 Gso11g2226 11 37963862 37972769 GST