Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2224 ATGTCCCCATCAGTGAAATCAAAATCCAAGTCCCAGGAAAAGGCCCCTGCAAGGGCTGGTCAGGAACAACATAAGACTTCTCCAAAGACTTCCAAGTCTCCAACTCATGGGAGTGGCACTCCTGCTAGTGCACGCAATCCCATGTCGGCAACCTTTCAAACTCCAGAAACCTCATTGGTTGCTTCTTCTACTCTAGTTCATGACAACAGTCAATTCCCAAAACTAGATGATGCTGATGAGCATTCTAGTAGTCCTCAAGGAACGGTGTCTGAGTGTGACTCGGTTTCTAACAGTGGTAGCTGCTCTGGTGAATCAGAAGAGTCTAAAGAGAAGGTTACGGCAACAAGCTCTTCTACTCGGCCAGATAGTATACCTGGTTGTGATAATGATAGAAGGGAGAAGATCCGCTTGAAGAATGAGAGGAAGCACCAGAGGCAGAGGGAAAGGAGAGCGCAAGAGTTGCATGACCGTTGTTGCGGGTACCTAATGTCGAGAAAGCTAGAATCACTTGCGCAGCAGTTAGTGGCAATGGGGTTCTCTTCCGAGCGAGCGACGTTGGCCTTAATGTTAAATGATGGCAAATTAGAGCAATCGGTATCCTGGCTATTTGAAGGGAGTGAAGAATATTCACAACCCAAGGATACTACTAGCCTTGTAAGTGAGGGTGATATGAAAATTGACATAAGTGATGAGCTTGCTCAGATATCTGCCTTGGAGGTGAAGTACAATTGTTCAAAGCAAGAGGTTGAGAGAGTAGTTGTTGCTTGTGAAGGTGATCTTCAAAAGGCAGAAAATACCTTAAAAACACAGAAGCAGGAATCTCCTACGACCCAATTGAAGTCAGAAGATTCTGCTCAAAATAATAATAGTCTGGTGAGATCACAAGGATTACCAGCAGCATCGGTTTCAATGCAGTACAGAGGGAATGAAAGTGACTTCAACCATTACAACAAGGTAGGTGGTTCTGATTCCATGTTCCTGGATGTTGAAACCGGGAATGTACATTCTCTGCAATTGAATCATCCAAACATAACGACTGAGAAAAGATGGAGTGGTGTTCCAGGGTCAATCCCATCTGCTATGTTCGGCATGGCACCATCCATGCAAGCAATGTCTCCATTTGCTAAAATGGAGGGCGGTCGGTCTATTGCCCATACAAACGAAGGAAGAATGATTCAACAAGGACCAGGAAGGGAGCCGGTAATGATGCAACATCCACAATTCACAAATGCCAAACAGAACTCTATGATGTCTTTAAATTCCTTTCCTTCAGGAGCAGCAGGTTGGCATGTAAATAGTATTCCAGGTGCTGACAATGTGAGGCCAAATGGGAAGTTACTACAAACTCAAAGCATAAGAAGTGTGAGTCCAAATCATTTGGAGCAATTTGGTCAAACTCCTTATAAAGAATATTCTCATTTCCTTGGACCAGCAGACTACTCATCTGCTGGAGTGGGTGGTTATTGCAAGCCAATGGGTGCATCATCATCCCCTCCACCTACAATTCCTCCTTGGCATCAAGGTTCATGGAGCACAAGCACGCCTTCACCTTCGCTCACGGTGCCAACTTCCCTTGGACTATTTTCTGGTCATCAGAATGCAGCCAGAACATTCAGCTCATATTCACACATGGATTGGAACGCTGGGGGCTTCATGCCGGAATTTGACTACACCAGCATAGATTGGAGTTTGAATGCGCCATCTTCTTCCGTGTCAGGTGGACTGAGGCTAGGGATCTCTTCAGTGTTGAGAAACAGTTATGGAGATAGGAGGGGCAGTCAATGCGTGAGTGGATTGCAAATGGCTAGGGAAACTTCATCATCTGGTGGATTGAGAGAGTGGACCACTCCTTTTGCTGGGAAGGACATATTCAGTGTTCCTAGGCAGTTTGTTACCTCTCCTCCTATGTAG 1911 0.4553 MSPSVKSKSKSQEKAPARAGQEQHKTSPKTSKSPTHGSGTPASARNPMSATFQTPETSLVASSTLVHDNSQFPKLDDADEHSSSPQGTVSECDSVSNSGSCSGESEESKEKVTATSSSTRPDSIPGCDNDRREKIRLKNERKHQRQRERRAQELHDRCCGYLMSRKLESLAQQLVAMGFSSERATLALMLNDGKLEQSVSWLFEGSEEYSQPKDTTSLVSEGDMKIDISDELAQISALEVKYNCSKQEVERVVVACEGDLQKAENTLKTQKQESPTTQLKSEDSAQNNNSLVRSQGLPAASVSMQYRGNESDFNHYNKVGGSDSMFLDVETGNVHSLQLNHPNITTEKRWSGVPGSIPSAMFGMAPSMQAMSPFAKMEGGRSIAHTNEGRMIQQGPGREPVMMQHPQFTNAKQNSMMSLNSFPSGAAGWHVNSIPGADNVRPNGKLLQTQSIRSVSPNHLEQFGQTPYKEYSHFLGPADYSSAGVGGYCKPMGASSSPPPTIPPWHQGSWSTSTPSPSLTVPTSLGLFSGHQNAARTFSSYSHMDWNAGGFMPEFDYTSIDWSLNAPSSSVSGGLRLGISSVLRNSYGDRRGSQCVSGLQMARETSSSGGLREWTTPFAGKDIFSVPRQFVTSPPM* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2224 636 SUPERFAMILY UBA-like 168 210 IPR009060 GO:0005515
Gso11g2224 636 Coils Coil 246 273 - -
Gso11g2224 636 MobiDBLite consensus disorder prediction 1 151 - -
Gso11g2224 636 Coils Coil 127 147 - -
Gso11g2224 636 PANTHER UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN 1 636 - -
Gso11g2224 636 PANTHER DOMAIN PROTEIN, PUTATIVE-RELATED 1 636 - -
Gso11g2224 636 MobiDBLite consensus disorder prediction 82 103 - -
Gso11g2224 636 MobiDBLite consensus disorder prediction 266 289 - -
Gso11g2224 636 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 165 205 IPR015940 -
Gso11g2224 636 SMART uba_6 167 204 IPR015940 -
Gso11g2224 636 MobiDBLite consensus disorder prediction 23 70 - -
Gso11g2224 636 Gene3D - 163 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2224 Gso-Chr11 37941360 37944955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2224 7 430 EF-hand Containing Proteins AT5G12120 40.133 2.38e-80 264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1908 15 42049261 42053874 Gso11g2224 11 37941360 37944955 GST