Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2223 ATGGAGGGAAAACTACTCCATGTGTCAACATATTCCTTTGTTTTCCTGCTATTTCTAAGCTTCAAACAACATGTTGTTACAAAGGCACAATCCCCAAACTATGTAGGAGATGACTGCCAAAACACCACCCAACAAAAAGCTCTCAGCAGTGCATACCAGACCAACCTTAACAGTCTCCTCTCATGGCTCTCCACAGATGCAGCCACAAGCAAAGGCTACAACCACAACAGCTTTGGCAACAACACCCCTGGAGGAGATGATTCTGCTGTGTATGGCCTCTATAATTGCCGCGGCGACGTGGTTGGATACTTTTGTCAATTCTGTGTCTCTACTGCTTCAAGAGAAGTTCTCCAGCGCTGCCCCAATAGAGTATCTGCTATTGTGTTGTATGATTTCTGCATCCTGAGGTACTCTAATGAAAACTTCTTTGGGAATGTCACGGTGTATCCATCATGGCACGCCGTTCAATCGAAAAACGTGTCTAGTAAGGAAGAGATACAAAAGGGTTTGGATTTTATGAGAGGTTTGATCAGAAAAGCAACTGTGGAGACCAATCTGTTGTACTATATGGATGGCTTCAATTTGAGTTCCACTCAGAAAAGGTATGGCTTGGTGCAATGCAGTAGAGATCTCACAAGTGATGGATGCAGAGAGTGTTTGGAGGCTATGTTAGCACAAGTTCCCAAATGTTGTGAACAAAATTTGGGGTGGCAAGTTTTGGCTGCAAGCTGTCTCATAAAGTATGATGATTATATTTTCTACCTTTTTCGCACTCAAGCATCTGATACACAAACAGCCAAAAAAAGGGGTGCTAGTAAGTCAAGAATAATATTGATCATTGGATTAAGTGTGCTGGGGGCATTAGCTTTACTATGTTTCAGTGTTTATTGCTTCTGGTTCAGGAAAAGATCTAGAAGAGGAAGAGGAAAAGATGGAAGGATACCTGATACCATTGATCAATCATCATATCACAATGTTCAAACTGAGGAAACACTTAATGTAGACTTGCCTACAATCCCATTAATCACAATTCTAAAGAGTACTGATAACTTTTCAGAAGCATCTAAGTTAGGGGAAGGTGGATTTGGCCCTGTTTACAAGGGAACTCTACCAGATGGAAGACAAATTGCAGTGAAAAGACTCTCACAAGCTTCTGGTCAAGGCTCAGAGGAGTTCAAGAATGAAGTGATGTTTATAGCCAAATTGCAACATTGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGGAAATGAAAAGATACTTGTATATGAGTATTTGTCGAATGCAAGTCTCGACTTTCACCTATTTGATGAGAGAAAGAAAAGGCAACTTGATTGGAATCTAAGATTAAGCATTATCAATGGCATAGCAAAAGGTCTTTTATACCTTCATGAGGACTCTAGACTCAAAGTTATTCATAGAGATCTCAAAGCTAGTAACATTCTGTTAGATGATGAAATGAATCCCAAAATATCAGATTTTGGATTAGCAAGGGCATTTGAAAAAGGCCAGAACCAGGCAAATACAAATCGAGTAATGGGCACCTATGGATACATGTCTCCAGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTCTTCAGCTATGGAGTTCTTGTTCTAGAAATCATTTGTGGGAAAAAGAACAGTGGTTTCTATCTATCAGAATGTGGTCAAAGTCTTACTTTATATGCTTGGAAAATATGGTGCGCAGGAAAAAGTTTGGAACTAATGGATCCAGTGCTGGAGAAATCTTGCATTGAGAGTGAAGTTATGAAGTGCATACACATTGGTCTGTTGTGCGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCCACTGTTGTTGTAATGCTAGCAAGTGACAAAATGTCCCTTCCAGAACCTAACCAGCCAGCATTTTCAGTTGGAAGAATGACCTTAGAGGGTGCATCTACATCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTAACAGTCACTAACATTTTACCAAGGTAG 2010 0.4025 MEGKLLHVSTYSFVFLLFLSFKQHVVTKAQSPNYVGDDCQNTTQQKALSSAYQTNLNSLLSWLSTDAATSKGYNHNSFGNNTPGGDDSAVYGLYNCRGDVVGYFCQFCVSTASREVLQRCPNRVSAIVLYDFCILRYSNENFFGNVTVYPSWHAVQSKNVSSKEEIQKGLDFMRGLIRKATVETNLLYYMDGFNLSSTQKRYGLVQCSRDLTSDGCRECLEAMLAQVPKCCEQNLGWQVLAASCLIKYDDYIFYLFRTQASDTQTAKKRGASKSRIILIIGLSVLGALALLCFSVYCFWFRKRSRRGRGKDGRIPDTIDQSSYHNVQTEETLNVDLPTIPLITILKSTDNFSEASKLGEGGFGPVYKGTLPDGRQIAVKRLSQASGQGSEEFKNEVMFIAKLQHCNLVRLLACCLEGNEKILVYEYLSNASLDFHLFDERKKRQLDWNLRLSIINGIAKGLLYLHEDSRLKVIHRDLKASNILLDDEMNPKISDFGLARAFEKGQNQANTNRVMGTYGYMSPEYAMEGLFSVKSDVFSYGVLVLEIICGKKNSGFYLSECGQSLTLYAWKIWCAGKSLELMDPVLEKSCIESEVMKCIHIGLLCVQEDAADRPTMSTVVVMLASDKMSLPEPNQPAFSVGRMTLEGASTSKSSKNLSINDVTVTNILPR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2223 669 Gene3D Transferase(Phosphotransferase) domain 1 427 633 - -
Gso11g2223 669 SMART serkin_6 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2223 669 ProSiteProfiles Gnk2-homologous domain profile. 34 142 IPR002902 -
Gso11g2223 669 Pfam Salt stress response/antifungal 196 251 IPR002902 -
Gso11g2223 669 Pfam Salt stress response/antifungal 39 139 IPR002902 -
Gso11g2223 669 Gene3D Phosphorylase Kinase; domain 1 315 426 - -
Gso11g2223 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 667 - -
Gso11g2223 669 ProSiteProfiles Protein kinase domain profile. 351 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2223 669 ProSiteProfiles Gnk2-homologous domain profile. 148 253 IPR002902 -
Gso11g2223 669 CDD STKc_IRAK 357 622 - -
Gso11g2223 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Gso11g2223 669 Pfam Protein tyrosine and serine/threonine kinase 355 621 IPR001245 GO:0004672|GO:0006468
Gso11g2223 669 Gene3D - 33 142 IPR038408 -
Gso11g2223 669 Gene3D - 150 253 IPR038408 -
Gso11g2223 669 SUPERFAMILY Protein kinase-like (PK-like) 336 645 IPR011009 -
Gso11g2223 669 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 20 667 - -
Gso11g2223 669 Pfam Domain of unknown function (DUF3403) 624 669 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2223 Gso-Chr11 37929181 37933351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2223 13 669 Receptor kinase-like Gene Family AT4G05200 40.936 2.79e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g2223 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1905 15 41996040 41999718 Gso11g2223 11 37929181 37933351 GST