Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2222 ATGAGAATGGAAACAAAAAATTTCATGACCCCTTTGAGGATTAGTCTTTGCTTCATTCTCCTCTTCCTCACTACAACAAGTGCACAAGCCCCAGTTTACAGTTACAATTCTTGCATGAACTCAACTTCTATTAGCCCCACATACAAAACTAACGTTAAGAGCCTCCTCTCATGGATCACCAATGATTCATCCATAAGCAAAGGGTTTAACTACACCACCATAAGCAGCAACAACGGTGGTGACAACGACGGTTATGGCGATGCTGTTTATGGGTTGTACAGCTGCAGATACGACATCACAGGATACTTCTGCCAGTTCTGTCTCACCACTGCTGTCAACGAAATCTCTCGGCTGTGTCCTGACAGTGTTACCGCTATCCTATGGTATGATGTTTGCATCCTCCGTTACTCCAATCAGAGTTTCCATGGCAAAGTTAGTTTAAGCCCAACGTGGAACGTTACCGGACCCAGAAAAATCAAGAATTCAACAGAAACTAAGAAAATTGAGGATGCTATGGAGGGTTTGATTACAAAAGCAACTATAGAGACCAAGCAGTTTTGGGCAGTGGAGGAGTTCGATTGGGGTGACAATGAGACATTGTATGGATGGGTGCAGTGTGATAGGGATCTTCCAAGTGATGAGTGCAGGAAGTGTTTGAATGCAATGTTAGAGATATTTCCACAATGTTGTGGGACAAAGGTACAATGGGCAGTTTTTGCTCCAACCTGTGGGATGAGGATGGATGATGAGAAGTTCTACCAGAAATCAGACGACAATGGTACTAGTACATCAAGAAAGTTGATTATTTCCTTTAGTGTTCTGGGGTCAGTTGCTCTACTATGTTTCAGTGTCTACTGCTTCTTGTACAGGAAACGAGTTAGAAAAGATGAGATGATGCTCGATGAGGAAACATTGAATGGAGACCTGCCTACAATTCCATTAATCACAATTCTAAATAGTACTAATAACTTTTCAAAAGCATCTAAATTAGGGGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTGAAGAGGCTCTCACAATTTTCTGGTCAAGGCTCAGAGGAGTTCAGGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCGTGCTGCTTGCAGGAAAAAGAGAAGATACTTGTATATGAGTATATGTCTAATGCAAGCCTCGACTCTCACTTGTTTGATGATGAAAAGAAAAAGCAACTTGACTGGAAACTAAGATTAAGAATTATCCATGGAATAGCAAGAGGAATTTTATACCTTCACGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAACCTAGCAATGTTCTATTAGACGATGAGATGAATGCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAATAGGACAGAACCAGGCAAATACAAAACGTGTAATGGGAACTTATGGATACATGGCTCCGGAGTATGCTATGGAAGGATTATTTTCTGTGAAATCTGATGTTTTTAGCTTTGGAGTTCTTGTTCTAGAAATCATAACTGGGAATAAGAACAGTGGATTCCATCTGTTAGAACATGGTCAAAGTCTTCTTTTATATGCTTGGAACATATGGTGTGCCGGAAAATGTTTGGAATTGATGGATCTAGCACTGGTAAAATCCTTCATAGCCAGTGAAGTTGAGAAGTGCATACACATTGCTTTGTTGTGTGTTCAACAAGATGAAGCAGATAGACCGACCATTTCCACTGTTGTTCTAATGTTGGGAAGTGACACAATACCCCTTCCAAAACCCAACCACCCTGCATTTTCAGTTGGAAGAATGACCTTAAATGAAGCATCAACTTCAGGAAGTTCCAAGAATCTTTCCATCAATGATGTAACAGTCTCTACCATGTTACCAAGGTAA 1929 0.4054 MRMETKNFMTPLRISLCFILLFLTTTSAQAPVYSYNSCMNSTSISPTYKTNVKSLLSWITNDSSISKGFNYTTISSNNGGDNDGYGDAVYGLYSCRYDITGYFCQFCLTTAVNEISRLCPDSVTAILWYDVCILRYSNQSFHGKVSLSPTWNVTGPRKIKNSTETKKIEDAMEGLITKATIETKQFWAVEEFDWGDNETLYGWVQCDRDLPSDECRKCLNAMLEIFPQCCGTKVQWAVFAPTCGMRMDDEKFYQKSDDNGTSTSRKLIISFSVLGSVALLCFSVYCFLYRKRVRKDEMMLDEETLNGDLPTIPLITILNSTNNFSKASKLGEGGFGPVYKGILPDGRQIAVKRLSQFSGQGSEEFRNEVMFIAKLQHRNLVRLLACCLQEKEKILVYEYMSNASLDSHLFDDEKKKQLDWKLRLRIIHGIARGILYLHEDSRLRVIHRDLKPSNVLLDDEMNAKISDFGLARAFEIGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIITGNKNSGFHLLEHGQSLLLYAWNIWCAGKCLELMDLALVKSFIASEVEKCIHIALLCVQQDEADRPTISTVVLMLGSDTIPLPKPNHPAFSVGRMTLNEASTSGSSKNLSINDVTVSTMLPR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2222 642 ProSiteProfiles Gnk2-homologous domain profile. 147 252 IPR002902 -
Gso11g2222 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Gso11g2222 642 Pfam Protein tyrosine and serine/threonine kinase 327 592 IPR001245 GO:0004672|GO:0006468
Gso11g2222 642 Gene3D Phosphorylase Kinase; domain 1 286 399 - -
Gso11g2222 642 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 19 639 - -
Gso11g2222 642 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 639 - -
Gso11g2222 642 Gene3D Transferase(Phosphotransferase) domain 1 400 600 - -
Gso11g2222 642 Pfam Domain of unknown function (DUF3403) 597 642 IPR021820 GO:0004674
Gso11g2222 642 ProSiteProfiles Protein kinase domain profile. 324 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2222 642 Gene3D - 152 252 IPR038408 -
Gso11g2222 642 Gene3D - 30 141 IPR038408 -
Gso11g2222 642 ProSiteProfiles Gnk2-homologous domain profile. 29 141 IPR002902 -
Gso11g2222 642 SUPERFAMILY Protein kinase-like (PK-like) 310 617 IPR011009 -
Gso11g2222 642 SMART serkin_6 324 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2222 642 CDD STKc_IRAK 330 595 - -
Gso11g2222 642 Pfam Salt stress response/antifungal 161 249 IPR002902 -
Gso11g2222 642 Pfam Salt stress response/antifungal 38 139 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2222 Gso-Chr11 37922018 37926874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2222 8 642 Receptor kinase-like Gene Family AT4G05200 39.559 8.23e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g2222 PK_Tyr_Ser-Thr 5.8e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1902 15 41841430 41847473 Gso11g2222 11 37922018 37926874 GST