Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2208 ATGGAAGAAGGGTTGTGTCAAAACTCAATTCCTGGTTCAGGTTTTGTTGATAAAACTAGGATTGTAGAGGCTAAACCCCTTCGTAGTTTGGCACCTGTGTTGCCAAAATCTCTTCAATCTTCCTTCTCTGGCCGGTATCCGTCTGTCTTTCCTCCATTTGTTTTGTTTGATGAACCTCAAGAGTCTCAACCATCACCTGCTCCCATGCCGGCTCCATTAAGGTCCTATAGGAATCCACTAGATGAAGAAGAAGCCCCTCATGGATCCAATGGAGAGACTTCTTCACCCATGGAGGGTCTCAACGGTAATAGCGTTGACAATAGCCAAAAGCGCGCTGTGCCGCCTATGCACAGCTGCAAATATTCCCAAAAGAGGAGTAAGAAAACTAAGGAGTCACAGTTTGATTTGAGTCCTTCAGTTGGTGGTATCAGTGTGGCCACAAGGGAAGATGGTGATCGCGAATTGGTTAATCTTGTGCTCATGACTTATGATTCTCTTCGGAGAAGGCTCTGCCAACTTGAAGATGCCAAGGAGTTGAACACAACGATGGCAATCAAGCGTGCAGATTTAAGAGCAAGCAATGCAATGACAGTCAAAGCATTTAGAACAAACACGAGGAGGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGACATTTTCTTTTTGCGGATGGAAATGTGTCTTGTGGGTTTACATGGCCAGTCGATGAGCGGAATTGACTACATGACCATCAAGGATGAGCTTCAGGAGGAACCAGTGGCTCTAAGCATTGTTTCATCAGGAGTATATGATAATGACGCCGAGGATAATGATGTTTTAATTTATACTGGTCAGGGTGAGAACTTCAACAAGAAAGATAAACACGTGATTGATCAGAAACTTCAAAGGGGTAATCTTGCTTTAGATAGAAGTTCACGACGCCACAATGAAGTAAGAGTCATCCGGGGTTTGAGAGATGCTGCCAACAAAAATGCAAAAATTTATGTCTATGATGGTCTGTATAAAATCCAGGATTCTTGGATAGAAAGAGGGAAATCTGGTGGTGGTGTATTTAAGTATAAGTTTGTTAGATTGCCTGGACAATCCAGTGCTTTCGCTGTTTGGAAATCGGTTCAGAAGTGGAAAATGAGCTCAAGCACATCTTCAAGGACTGGTATTATTCTTGCAGACCTCTCTACAGGAGTTGAGAGTATTCCTGTATCACTTGTCAATGAAGTTGACAATGAGAAGGGCCCTTCTTTTTTCACTTATTTCCATTCTCTCAGAGATCCAAAACCATTCAGTTTAGCACAATCATCATATGGCTGCAACTGTAACAAAACATGTGTCCCTGGGGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGACTTTCCATATACTGCAAATGGTGTCCTAGTGAGTCGGAAACCATTGGTTCATGAGTGTGGCCCATTGTGTAAGTGTTTTCCTAACTGCAAGAATCGAGTATCCCAGACTGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAAGATAGAGGGTGGGGACTTAGATCACTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACATTGCCAAGGTAAATAAGAATAGGGGATATGATGATGAGTATGTTTTTGATACAAGCCGTATTTACGATACATTCAAATGGAATTATGAACCTAGCTTATTGGAAGAAATAAGCTCAAATGTCTCTAGTGAGGATTATGATATACCGTCTCCTCTAATTATCAGTTCTAAGAAATTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTGTATGCAGAAAATAATCAATCCTTTCTTCACATTGCATTTTTTGCCCTCAGACACATTCCTCCTATGACAGAGTTAACATATGATTATGGCTGTTCTGGTCATGCTGATGGTAGCAGTGCACCCAAAGGGAGAAAGAAATGCTCATGTGGATCATCAAAATGCCGTGGTTCTTTTGGTTGA 2022 0.4194 MEEGLCQNSIPGSGFVDKTRIVEAKPLRSLAPVLPKSLQSSFSGRYPSVFPPFVLFDEPQESQPSPAPMPAPLRSYRNPLDEEEAPHGSNGETSSPMEGLNGNSVDNSQKRAVPPMHSCKYSQKRSKKTKESQFDLSPSVGGISVATREDGDRELVNLVLMTYDSLRRRLCQLEDAKELNTTMAIKRADLRASNAMTVKAFRTNTRRRVGAVPGVEIGDIFFLRMEMCLVGLHGQSMSGIDYMTIKDELQEEPVALSIVSSGVYDNDAEDNDVLIYTGQGENFNKKDKHVIDQKLQRGNLALDRSSRRHNEVRVIRGLRDAANKNAKIYVYDGLYKIQDSWIERGKSGGGVFKYKFVRLPGQSSAFAVWKSVQKWKMSSSTSSRTGIILADLSTGVESIPVSLVNEVDNEKGPSFFTYFHSLRDPKPFSLAQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYTANGVLVSRKPLVHECGPLCKCFPNCKNRVSQTGLKHQMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDIAKVNKNRGYDDEYVFDTSRIYDTFKWNYEPSLLEEISSNVSSEDYDIPSPLIISSKKFGNVARYMNHSCSPNVFWQPVLYAENNQSFLHIAFFALRHIPPMTELTYDYGCSGHADGSSAPKGRKKCSCGSSKCRGSFG* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2208 673 ProSiteProfiles Post-SET domain profile. 657 673 IPR003616 -
Gso11g2208 673 ProSiteProfiles SET domain profile. 499 644 IPR001214 GO:0005515
Gso11g2208 673 SMART G9a_1 205 362 IPR003105 -
Gso11g2208 673 Pfam SAD/SRA domain 209 362 IPR003105 -
Gso11g2208 673 ProSiteProfiles YDG domain profile. 210 358 IPR003105 -
Gso11g2208 673 MobiDBLite consensus disorder prediction 89 111 - -
Gso11g2208 673 SUPERFAMILY SET domain 398 670 IPR046341 -
Gso11g2208 673 MobiDBLite consensus disorder prediction 57 138 - -
Gso11g2208 673 SMART set_7 499 650 IPR001214 GO:0005515
Gso11g2208 673 ProSiteProfiles Pre-SET domain profile. 435 496 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g2208 673 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 671 - -
Gso11g2208 673 Pfam SET domain 510 644 IPR001214 GO:0005515
Gso11g2208 673 SUPERFAMILY PUA domain-like 193 380 IPR015947 -
Gso11g2208 673 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 671 - -
Gso11g2208 673 SMART preset_2 389 483 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g2208 673 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 673 IPR025794 GO:0016571
Gso11g2208 673 Gene3D - 192 381 IPR036987 -
Gso11g2208 673 Pfam Pre-SET motif 393 491 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g2208 673 Gene3D SET domain 382 672 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2208 Gso-Chr11 37719984 37726336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2208 12 673 Su(var)3-9 homologs AT5G04940 50.702 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso11g2208 SAD_SRA 1.9e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1889 15 41137452 41149177 Gso11g2208 11 37719984 37726336 GST
Gso4g1034 4 15578441 15582831 Gso11g2208 11 37719984 37726336 PCT
Gso11g2208 11 37719984 37726336 Gso4g1034 4 15578441 15582831 PCT