Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2201 ATGTCCTCCTTCAAATCTTACGGAAAGGTTGATGAATCCGAGCAAGCAAGGCTCGAAGCTCGCCGCAAAACGGGAAAGCGAGTCACCATCATAGCCCTGTCCACCATAGTCCTCATCGGAGTTGTGTGTGCTGCTGTATTTGGAACCGTTGCTCACAACAACTCAGATAATAATGATGGTGTAAATAGTAATAGTGCACCATTTCTTTCGAATTCAGTGAAGAGTGTTTGTGACCTGACACTTTACAAGGGAGCATGCTACAGCAGCATTGGTCCTCTTGTGCACTCGGGTCAGGTTCGACCTGAGAAGTTGTTCTTGCTGTCTATTGAAGTTGCCCTAGCTGAGGCTTCAAGGGCTGTTGAGTATTTCTCTGAGAAGGGAGTTTTTAATGGCTTGATCAATGTTGATAATAAAACAATGGAAGGCTTTAAGAATTGCAAGGATCTTTTGGGTCTTGCGGTTGATCATTTGAATAGCTCTTTGGCTTCTGGGGGCAAGTCTTCATTGCTTGATGTGTTGGAGGATCTTAGAACTTGGTTGAGTGCTGCAGGTACTTACCAGCAAACCTGCATTGATGGCTTTGGAGAGGCAGGAGAAGCACTGAAGACCAGTGTTGTAAACAATCTAAAAAATTCTACTGAGTTCACCAGTAATAGTCTTGCCATTGTTACTTGGCTCAACAAGGCTGCAAGCACAGTGAACTTGAGGCGCTTGTTGAGTACCACTTTGCCACATCATCATCATATGGTAGAACCAAAGTGGCTTCATTCTAAAGACCGGAAGCTGATTCAAAAAGATGATAATTTGAAGAGAAAAGCTGACATTGTTGTAGCAAAAGATGGCAGCGGGAAATTTAAAACAATCACTGCTGCACTAAAACATGTCCCTGAGAAAAGTGACAAGAGGACTGTGATCTATGTGAAGAAGGGGGTTTACTATGAGAATGTGAGGGTGGAGAAGACTAAATGGAATGTCATGATCATTGGTGATGGTATGAATGCCACAATTGTATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTGATGACAAGTGCTGATCAAGCGGTTTACTACAGGTGCCAAATTGATGCATTTCAGGACTCTCTCTATGTGCATTCCAACCGCCAATTCTACAGAGAATGCAACATTTATGGCACAGTTGATTTCATTTTTGGTAACTCAGCAGTGGTCCTCCAAAACTGCAACATTTTCCCAAGGGTGCCTATGCAGGGCCAGCAGAATACCATAACAGCACAGGGCAAAACTGACCCCAACATGAACACTGGAATTTCAATTCAAAGTTGCAACATTGCACCCTTTGGAGACTTAAGTTCTGTGAAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACTACAGTGTTTATGCAATCCACATTGGGGAGTTTCATTCACCCAAATGGATGGTTACCTTGGGTAGGAGACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTTCTTCAACAAAGAATAGAGTGAAGTGGAAGGGTTTGAAAACCATTACAAAGAAACAAGCTAGCATGTTTACTGTCAATGCTTTTCTTTCAGGGGAGAAATGGATTACAGCTTCTGGTGCCCCCTTTAAATCTTCAACGTGA 1743 0.4326 MSSFKSYGKVDESEQARLEARRKTGKRVTIIALSTIVLIGVVCAAVFGTVAHNNSDNNDGVNSNSAPFLSNSVKSVCDLTLYKGACYSSIGPLVHSGQVRPEKLFLLSIEVALAEASRAVEYFSEKGVFNGLINVDNKTMEGFKNCKDLLGLAVDHLNSSLASGGKSSLLDVLEDLRTWLSAAGTYQQTCIDGFGEAGEALKTSVVNNLKNSTEFTSNSLAIVTWLNKAASTVNLRRLLSTTLPHHHHMVEPKWLHSKDRKLIQKDDNLKRKADIVVAKDGSGKFKTITAALKHVPEKSDKRTVIYVKKGVYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCQIDAFQDSLYVHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNIFPRVPMQGQQNTITAQGKTDPNMNTGISIQSCNIAPFGDLSSVKTYLGRPWKNYSTTVFMQSTLGSFIHPNGWLPWVGDSAPDTIFYAEFQNVGPGSSTKNRVKWKGLKTITKKQASMFTVNAFLSGEKWITASGAPFKSST* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2201 580 SMART PMEI_2 68 222 IPR006501 GO:0004857
Gso11g2201 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 228 IPR035513 -
Gso11g2201 580 Pfam Plant invertase/pectin methylesterase inhibitor 72 222 IPR006501 GO:0004857
Gso11g2201 580 SUPERFAMILY Pectin lyase-like 272 576 IPR011050 -
Gso11g2201 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 69 226 IPR006501 GO:0004857
Gso11g2201 580 PANTHER PECTINESTERASE 6 578 - -
Gso11g2201 580 Gene3D - 269 580 IPR012334 -
Gso11g2201 580 Pfam Pectinesterase 274 565 IPR000070 GO:0030599|GO:0042545
Gso11g2201 580 PANTHER PECTINESTERASE 6 578 - -
Gso11g2201 580 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Gso11g2201 580 CDD PMEI-like_3 75 228 - -
Gso11g2201 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 226 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2201 Gso-Chr11 37655219 37658978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2201 7 578 Carbohydrate Esterase AT3G10710 57.143 0.0 667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1886 15 41060117 41063390 Gso11g2201 11 37655219 37658978 GST
Gso6g2587 6 47653214 47656564 Gso11g2201 11 37655219 37658978 PCT
Gso11g2201 11 37655219 37658978 Gso6g2587 6 47653214 47656564 PCT