LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g2200	ATGTCAACCCCACCAGTGTCCTTTCTATTCCTCCTTTTGTTCTCCCTCGTTGTACCATCACTATTAGCTCAGGCTCCATCACCATCTCCAACACATTCTCCTCATCCTCCACCATCTCCAAAAGATACACCTCCTCCTTCTACTTCTACACCACCCTCTTCAAAACACTCACCTCCTCCTCCTTCTTCACCACCACCTTCTCCAAAACATGCTCCTCCTCCTCTTCCTCCTTCCTCTCCACCACCACCATCTCCAAAACATGCTCCTCCTCCTCCTCCTTCTTCTTCTCCACCACCACCATCTCCAAAACATGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTCCACCACCACCATCTCCAAAACATGCTCCTCCTCCTCCTTTTTCACCACCACCATCTCAAACACATGTCCCTCCACCTCCTCCTTCTCCATCATCTCCAAAACATGCCCCTCCACCTCCTACTCCATCACCACCATCTTCAACACATTCCCCTCCTCCTCCTCCTCCTTCTCCAACACCACCTCCAGCACGTGCCCCTTCTCCCCCTCCGCCTCCACCACCTTCATCACCCTCTTCAGCATGCAAGTCCACACTATACCCTAAACTATGCCGCTCCATTCTCTCCTCCATCCGTTCCTCTCCTTCCGACCCCTACAACCTAGGCAAATTCTCCATCAAACAAAGCCTTAAACAAGCCAAGAAACTAGTCAAGGTCTTCAAAAACTTCCTCACAAAACACAAGTCATCCTCTTCCCTCAACACCGCAGAAATCGCAGCGTTGGAGGACTGCAGCGAACTCAACAAGCTCAGTATTGATTACTTGGAGTCGGTCTCAATAGAGCTAAAGTCGATCGACTCCAATAACACTGAGCTGGTTGAGAAGATTGAGACGTATCTCAGCGCTGTGGCCACTAACCACTACACTTGCTATGATGGGTTGGTGGTGATCAAGAGCAACATTGCCAATGCTATTGCTGTGCCTCTCAAGAATGTCACCCAATTATACAGTGTGTCACTTGGGTTGTTCACGCAGGCTCTGAAGAAAAACCTCAAGAAGCATAAGACACGCAAACATGGTCTTCCCACCAAGGACTACAAGGTCAGGCAGCCATTGAGAAAACTCATCAAGCTTCTTCACACAAAGTACAGTTGCACAGGATCATCCAACTGTAGTACTAGAAGTGAAAGGATTCTTCAAGAAAGCGAGAACAAAGGAGTTCTTCTAAAAGAGTTTGCGATTGTTAGCCTTGATGGCACAGAAAACTTCACCTCTATTGGAGATGCTATTGCCGCTGCACCCGATAATTTGAGGCCAGAAGATGGCTATTTTCTTATCTATGCCAGAGAAGGAAACTATGAGGAATATGTCACTGTTCCCATTCAAAAGAAAAATATCTTGCTTATTGGTGATGGCATCAACAAGACTTGCATGACAGGAAATCATAGTGTCGTAGATGGTTGGACCACTTTCAATTCTTCAACCTTTGCTGTCTCTGGAGAAAGATTTGTAGCAGTGGATGTCACATTCAGAAACACAGCAGGTCCTCAGAAGCACCAAGCAGTGGCCTTGAGGAACAATGCAGACCTCTCCACATTCTACCGTTGCAGCTTTGAAGGATACCAAGACACTCTCTATGTCCACTCCCTCAGGCAATTCTATAGAGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGCAATGCTGCTGTGGTGTTCCAGAGCTGCAACATTTATGCCAGAAAACCAATGCCAAACCAGAAGAATGCTGTCACAGCACAAGGGAGAACTGACCCCAATCAAAACACTGGAATTTCAATACAGAATTGCAAGATTGATGCTGCACCTGACTTAGCTGCAGATTTGAATTCAACTGAAAATTACTTAGGCAGGCCGTGGAAAGTGTATTCAAGGACTGTGTTCATGCAGTCATATATTGGAGAACTAATTCAATCTGCTGGATGGTTAGAGTGGAATGGCACTGATGGGTTAAGCACCCTCTTTTATGGTGAGTTCCAGAACTTTGGACCTGGTTCTGATACCAGCAAGAGGGTGCAATGGAGTGGTTACAATCTGTTGAGTGCTACTCAAGCTAGGAACTTTACTGTGCATAATTTTACCTTGGGGTATACATGGCTTCCGGATACAGATATACCCTATTCTGAAGGACTTTAG	2187	0.465	MSTPPVSFLFLLLFSLVVPSLLAQAPSPSPTHSPHPPPSPKDTPPPSTSTPPSSKHSPPPPSSPPPSPKHAPPPLPPSSPPPPSPKHAPPPPPSSSPPPPSPKHAPPPPPPPPPPSSPPPPSPKHAPPPPFSPPPSQTHVPPPPPSPSSPKHAPPPPTPSPPSSTHSPPPPPPSPTPPPARAPSPPPPPPPSSPSSACKSTLYPKLCRSILSSIRSSPSDPYNLGKFSIKQSLKQAKKLVKVFKNFLTKHKSSSSLNTAEIAALEDCSELNKLSIDYLESVSIELKSIDSNNTELVEKIETYLSAVATNHYTCYDGLVVIKSNIANAIAVPLKNVTQLYSVSLGLFTQALKKNLKKHKTRKHGLPTKDYKVRQPLRKLIKLLHTKYSCTGSSNCSTRSERILQESENKGVLLKEFAIVSLDGTENFTSIGDAIAAAPDNLRPEDGYFLIYAREGNYEEYVTVPIQKKNILLIGDGINKTCMTGNHSVVDGWTTFNSSTFAVSGERFVAVDVTFRNTAGPQKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPMPNQKNAVTAQGRTDPNQNTGISIQNCKIDAAPDLAADLNSTENYLGRPWKVYSRTVFMQSYIGELIQSAGWLEWNGTDGLSTLFYGEFQNFGPGSDTSKRVQWSGYNLLSATQARNFTVHNFTLGYTWLPDTDIPYSEGL*	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g2200	728	PRINTS	Proline rich extensin signature	18	30	-	-
	Gso11g2200	728	PRINTS	Proline rich extensin signature	37	53	-	-
	Gso11g2200	728	PRINTS	Proline rich extensin signature	57	69	-	-
	Gso11g2200	728	PRINTS	Proline rich extensin signature	73	94	-	-
	Gso11g2200	728	Pfam	Pectinesterase	416	711	IPR000070	GO:0030599\|GO:0042545
	Gso11g2200	728	MobiDBLite	consensus disorder prediction	23	199	-	-
	Gso11g2200	728	CDD	PMEI-like_3	197	347	-	-
	Gso11g2200	728	SMART	PMEI_2	189	345	IPR006501	GO:0004857
	Gso11g2200	728	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	196	348	IPR006501	GO:0004857
	Gso11g2200	728	SUPERFAMILY	Pectin lyase-like	415	727	IPR011050	-
	Gso11g2200	728	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	196	348	IPR035513	-
	Gso11g2200	728	Gene3D	-	415	728	IPR012334	-
	Gso11g2200	728	Gene3D	Invertase/pectin methylesterase inhibitor family protein	193	349	IPR035513	-
	Gso11g2200	728	PANTHER	PECTINESTERASE	188	727	-	-
	Gso11g2200	728	Pfam	Plant invertase/pectin methylesterase inhibitor	195	344	IPR006501	GO:0004857
	Gso11g2200	728	ProSitePatterns	Pectinesterase signature 2.	562	571	IPR033131	-
	Gso11g2200	728	MobiDBLite	consensus disorder prediction	29	195	-	-
	Gso11g2200	728	PANTHER	PECTINESTERASE	188	727	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g2200	Gso-Chr11	37648377	37653904	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g2200	146	728	Carbohydrate Esterase	AT3G10720	60.136	0.0	706

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso6g2588	6	47656786	47662168	Gso11g2200	11	37648377	37653904	PCT
	Gso11g2200	11	37648377	37653904	Gso6g2588	6	47656786	47662168	PCT