Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2167 ATGGGCTTGAGCTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACGTTATTGGAGGCTCAGAATTTGGAACTTCCAAAGCCTAATCTGATGAGGAAACAACAACAACAACAACAACAAACTCAGCCGAATTCAGAGTCTTTGAAGTGTCCAAGATGTGACTCTACCAACACAAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACCAAAGGTGGAACTCTACGCAATGTTCCAGTTGGTGGTGGAAGGAAGAACAAGAGGGTAAGAAAATCAATCACTACTCCAATTACAACATCTTCCACCACAACATCAATCACAACCACCACTTCTACTTGCACTGCCACAGTCACAACCTCAATTGGCAACAACAACAACAACATGGATGCTATGTTGGGTTGTAATAGCCACATGATAATCCAAACTCCTCTTGCGGATGATCACAAAAACATGTCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAACAACAGAATCTGATGAACAACACAAGAGACCTAGAAGGCAAAGATTTTGGTATTGGTATTGGTAATGGTAATAATGGTATCTTTCCTAGTTTAACTTTGCCTTTTCCTATTCATCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGATACCAACCCTTGTTCAGTAGTGTCAACTTCTCTTAGATCCTCCAATGTTTATAACTATGGGGAGGATCAGTTTAAAGCAATAGAGGAACCAACCATCAATAGTACTATTACAACTACTACTATAGTGCCTAGCACCAACAACACACATCATCCATGGGAGATAGCAGCAGCAACAAGTGGTGTTGGCTTGGGAACTTCTTCAAATTCAAACTATTGGAATTGGGAGGATTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGGTTCAGATATCAAACCTTGA 1008 0.4147 MGLSSKQVSSSGLDWKQTLLEAQNLELPKPNLMRKQQQQQQQTQPNSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVRKSITTPITTSSTTTSITTTTSTCTATVTTSIGNNNNNMDAMLGCNSHMIIQTPLADDHKNMSSSLYQALIRPPPLLLQQQNLMNNTRDLEGKDFGIGIGNGNNGIFPSLTLPFPIHHQSQSLLFPFSTSSSSFDTNPCSVVSTSLRSSNVYNYGEDQFKAIEEPTINSTITTTTIVPSTNNTHHPWEIAAATSGVGLGTSSNSNYWNWEDFDSLVSTDLKDPWDGSDIKP* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2167 335 PANTHER OS06G0284500 PROTEIN 36 222 - -
Gso11g2167 335 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Gso11g2167 335 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Gso11g2167 335 MobiDBLite consensus disorder prediction 32 51 - -
Gso11g2167 335 Pfam Dof domain, zinc finger 49 102 IPR003851 GO:0003677|GO:0006355
Gso11g2167 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 222 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2167 Gso-Chr11 37217935 37219911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2167 45 160 C2C2-Dof Transcription Factor Family AT3G45610 50.000 4.60e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g2167 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2167 - - gmx:100791855 563.533