Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2126 ATGATAAAAAAAACAAACACACACTACACTAAGTTCAGATCACAGAGAGACAAAGATATGGAACAAGAGGGAGAAAAAGGGAGAGAGGAGAAAAGACAAATTCAACAACAGCAACCTCCTCCTCAGCAGCATCAGAAATGTCCACGCTGCGATTCCATGAACACCAAGTTCTGCTACTTCAACAACTATAGCCTCTCGCAGCCTCGTCATTTCTGCAAAGCGTGTAAAAGGTACTGGACACTCGGTGGAACCTTCAGGAACATACCCGTTGGTGGCGGTTCCCGCAAAGTGAAGCGTGGCAAAACAAATTCTCCATCTTCTTCTTCTTCTTCTTCTTCTTGTTCAAATTTGCTCTCACAGCCACAGCAGAATCTGTTGATGAGGCCTTCTCCACCACCACTCACTACTAATACTATGGTTCAGTCAACTAGTCCTTATTATTATAATCTTGGTGTTGGTGGAAATGGGTATCTCTCTTTTCATTCTTCTCTGAACAACAACACACCATCACAGCCTTCCGATCAGTATCTGAAAGTTGGTGGTGGTGATCATGTTGCTGGTTCTTCTAATATTTCTCCTCTTGTGTCTGGCTTCAATAACGCTGCTAGTTATTCGCTTCCACCGCGATTCCACCACCAGCAGCAGCAACAATCTATGCATTCTGCACAACAACAACAACAACGTTTGATTAACATTCCATCAAACATGGCTAGTAGTAGCAGTGATGTTTCTCATTCTGGTGTTCGCCCGCAAAGCTTGATCAACAATGTTTCAACAAGTACAGACCATAATGTTTCAACAAGTACAAACCATAGGGCTATTACTACTTCTGATGCTTCTTTGTGGAGTGCTGCTACTATCAACGCCACTTCCATCGGTGGAAACTCTGATCAGAACAATGTCGTCAAAGGGAGTTCTTCTTCTTCTTCTTCTTTGGTCCCAAATCTTTGGCTTCATCGCCCTGGGTTTGGTCCTCCTCAATAA 984 0.4339 MIKKTNTHYTKFRSQRDKDMEQEGEKGREEKRQIQQQQPPPQQHQKCPRCDSMNTKFCYFNNYSLSQPRHFCKACKRYWTLGGTFRNIPVGGGSRKVKRGKTNSPSSSSSSSSCSNLLSQPQQNLLMRPSPPPLTTNTMVQSTSPYYYNLGVGGNGYLSFHSSLNNNTPSQPSDQYLKVGGGDHVAGSSNISPLVSGFNNAASYSLPPRFHHQQQQQSMHSAQQQQQRLINIPSNMASSSSDVSHSGVRPQSLINNVSTSTDHNVSTSTNHRAITTSDASLWSAATINATSIGGNSDQNNVVKGSSSSSSSLVPNLWLHRPGFGPPQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2126 327 MobiDBLite consensus disorder prediction 10 33 - -
Gso11g2126 327 MobiDBLite consensus disorder prediction 1 48 - -
Gso11g2126 327 MobiDBLite consensus disorder prediction 89 138 - -
Gso11g2126 327 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Gso11g2126 327 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 327 IPR045174 GO:0003700|GO:0006355
Gso11g2126 327 MobiDBLite consensus disorder prediction 290 315 - -
Gso11g2126 327 MobiDBLite consensus disorder prediction 205 269 - -
Gso11g2126 327 Pfam Dof domain, zinc finger 43 99 IPR003851 GO:0003677|GO:0006355
Gso11g2126 327 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Gso11g2126 327 MobiDBLite consensus disorder prediction 99 138 - -
Gso11g2126 327 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 18 327 - -
Gso11g2126 327 MobiDBLite consensus disorder prediction 34 48 - -
Gso11g2126 327 MobiDBLite consensus disorder prediction 290 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2126 Gso-Chr11 36806241 36808254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2126 35 107 C2C2-Dof Transcription Factor Family AT1G51700 68.000 2.43e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g2126 zf-Dof 9.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2126 - - gsj:114375744 579.711