Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2125 ATGTTTGGTGGTAATAACTGTGAGAAAATGGTAGCAGTAGTCACCCCTCAAACAGCGTCTAACAAATGGACACAGACACAACAGATAGATGATCACAAGGCCCCAATGATGGGAAGAGTCATGGAAAAACCAAGCCAAGATCTTCTTCAGCAGCAACAACAAGCCCTAAAGTGCCCTCGCTGCGAGTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGCTTGTCACAGCCTAGGCACTTTTGCAAAGCCTGCAAGCGTTACTGGACAAGAGGTGGCACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGAAAAAACAAGCGTGTGAAGCGTCCAACAAATCACGGTGATTCTTCTTCTTCTGCTGCTAACTCTCCTTCTTCGTCCAATTCAAACCCTCCTTCACAGCCCCACATCGATAATATTATTGCCTCTAGCTCCACCACGAACCATATAAATAATATCAACCCTTTCTTTTATGGTGGTGATGTGATGAGTAGTGTTCCTTTCCCAAGGTTTAATCTTCATTCTCAATTGAATGCTCTTGGGTTAGGTTTTTCAACTGGGGTTAGTGAGAATGGGTTTAGTACTTCAAATAACAACAGCTTTTTTTCTGCTTATAACTCTATGTTTGGTTCTTCTTCTTCCTCAACTTGTGCACCTTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCAACTCTTCTGCAGCAAAAGTTAATGAGTGGTGGTGGTGGTGGTGGGGTGAAGGGTAGTAGTGATCATGATCAAGGTGGCAACACTTTCCATGGCTTGGCACCGCTACAAGGGTTGCAAGTGGAAGGGAATAATAATAATAGTAATAATATTGGCACAAAAGAAGTGAGAGGTGAGGGACAAAACAGGTTTGATTGGAGTAATAATAACAATAACAACAATGGTGGTGGTGGTTGTCAAAACCAGATGGAGCATGTGGGTTTGTCTGATCCTAATTCGCTCTATTGGAACACTGCAACGGGTTTGGGTGCTTGGAGTGATCAACCTAACAACATTGGTCCTTCAGTCACTTCTCTGATCTAG 1062 0.4369 MFGGNNCEKMVAVVTPQTASNKWTQTQQIDDHKAPMMGRVMEKPSQDLLQQQQQALKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPTNHGDSSSSAANSPSSSNSNPPSQPHIDNIIASSSTTNHINNINPFFYGGDVMSSVPFPRFNLHSQLNALGLGFSTGVSENGFSTSNNNSFFSAYNSMFGSSSSSTCAPSTPVMASLLSSTLLQQKLMSGGGGGGVKGSSDHDQGGNTFHGLAPLQGLQVEGNNNNSNNIGTKEVRGEGQNRFDWSNNNNNNNGGGGCQNQMEHVGLSDPNSLYWNTATGLGAWSDQPNNIGPSVTSLI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2125 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 338 IPR045174 GO:0003700|GO:0006355
Gso11g2125 353 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Gso11g2125 353 MobiDBLite consensus disorder prediction 101 144 - -
Gso11g2125 353 MobiDBLite consensus disorder prediction 117 144 - -
Gso11g2125 353 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Gso11g2125 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 5 338 - -
Gso11g2125 353 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2125 Gso-Chr11 36798972 36801021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2125 56 353 C2C2-Dof Transcription Factor Family AT1G28310 40.000 2.98e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g2125 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2125 - - gmx:778105 631.713