Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1189 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAATAACCATCCTCAAGCAAATAATAATGGTGGTGACAACACTCAGCTTCTTCCACCTTTGCCACCACATCAATCTCATGTGGGAGGTTCTGTGGGTTCAATCAGGCCAGGTTCCATGGCAGATCGAGCTAGGCTAGCTAAGTTACCACCACCAGAAGCAGCTCTCAAGTGTCCACGTTGTGATTCCACCAACACTAAATTTTGCTACTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTCTGCAAGACTTGTAGGCGCTATTGGACAAGAGGGGGTGCCCTAAGAAACGTTCCTGTGGGTGGAGGGTGCCGTAGGAACAAGAAGAACAAGAGGAGTAGTCGCTCTAAGTCTCCAGCATCATCGGAGAAACAACAAACACTTTCTGGTTCCACAAGTGCAATAGTCCCCTCTGGTGGAACCACTCATGAACAGATTGGTCATCAGTTGCCACAGCCACAGAACCTTCCCTTCTTGGCTTCTCTTCAGAACCTTAATCGTTATGCTGTTGGAAACATGGGTCTTGGGTTGCGTGAGATTCACGGACAGAACGAGAACATGGGGTTTCAGATTGGTAATTCTTCTGCTGGTGGAGGAATGGATCAGTGGCGCTTGCATCAGCAGGTTCCTTTCTTTAATGGTTTTGAATCAACTTCAGCTGGTTCATACCCTTTTCAAAATGAAGGTATTAACGAAACACCTTCTGGTTTTGGTGGTGACATAACAACGAATTCCAGGGTTTCTCAGATGCCATCGGTTAAAATGGAGGAAAGTGGGGCTTTGAATTTGTCAAGATCAACACTCAATAATGTCTCAGAAAATAACCAGTACTATTCATGGACTGATATGTCAGGTCTTGCTTCTTTTTCTGCTACTCATCTCTTGTAA 945 0.455 MVFSSIPVFVDPPNWQQQPNNHPQANNNGGDNTQLLPPLPPHQSHVGGSVGSIRPGSMADRARLAKLPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSSRSKSPASSEKQQTLSGSTSAIVPSGGTTHEQIGHQLPQPQNLPFLASLQNLNRYAVGNMGLGLREIHGQNENMGFQIGNSSAGGGMDQWRLHQQVPFFNGFESTSAGSYPFQNEGINETPSGFGGDITTNSRVSQMPSVKMEESGALNLSRSTLNNVSENNQYYSWTDMSGLASFSATHLL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1189 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 309 IPR045174 GO:0003700|GO:0006355
Gso11g1189 314 MobiDBLite consensus disorder prediction 11 56 - -
Gso11g1189 314 MobiDBLite consensus disorder prediction 138 170 - -
Gso11g1189 314 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Gso11g1189 314 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 309 - -
Gso11g1189 314 MobiDBLite consensus disorder prediction 118 170 - -
Gso11g1189 314 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677|GO:0006355
Gso11g1189 314 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Gso11g1189 314 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1189 Gso-Chr11 10700591 10702337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1189 41 310 C2C2-Dof Transcription Factor Family AT3G55370 44.027 5.88e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g1189 zf-Dof 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1189 - - gmx:100801154 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1189 11 10700591 10702337 Gso11g1189 11 10700591 10702337 ECH
Gso12g0527 12 4715553 4717239 Gso11g1189 11 10700591 10702337 GST
Gso15g0345 15 3123093 3124871 Gso11g1189 11 10700591 10702337 PCT
Gso11g3464 11 50540342 50542117 Gso11g1189 11 10700591 10702337 PCT
Gso11g1189 11 10700591 10702337 Gso15g0345 15 3123093 3124871 PCT
Gso11g1189 11 10700591 10702337 Gso11g3464 11 50540342 50542117 PCT