Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0508 ATGATTCAAGAAATGTTGGGTGGTGCTAGTGCTAGCCACATACCAGGAGAAAGAAAAATCTCCATTAATAACGGAGGAGGAGGAAGAGCACTTCTACTAACACCACCCACATCATCATCTTCTCCTTCTTGCACAACAAGCATAACTACTTCCACCGCCACCGCCACCGCGACCTCATCGAATTCAGAGAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGTCACTTCTGCAAGACGTGTCGCCGCTACTGGACCAAAGGCGGCGCTCTCAGGAATGTTCCCATCGGTGGTGGCTGCCGGAAAAGCAAAAGCTCCGGTGGCATGTCCAACTCGGTGGCGAAGCAAACCGCCACAAAGATGAAAGCGGTGGCATCAGAGCTTGGAAGGTCGCCACAAGGACTCTTCGACCAAGAGCTTCCACAAACCCCAATCCTGTGGGGTTCTCCACAAAATTCTCAACTGATGGCTTTACTAAGAGCTACCCAAAACCAAAACCCTAACCCTAACCCTAGTCCCATGTCAATTTCTGTCAAGGGAGAAGGGAACTTAATGGGATCTCACTCCCACATGGTGAGTACTGAGTCATTGCTCGCGAATGGGTTGTTGAATCCTAGAACTAGTCTAGGCTTTGATGATGGCCGTGTGGGAGAAGCACTTCCTTCACTGGGTCTATGCAGCTCTTTTTGGAGGAACAATCAAGATCAGACTCAGCAACAAAACAACGGTTTTGTAGTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCGTCATCAGTTAATTATTGGGGAAGTGATAACTCACCAGTGTTTCTAAGCAACATGGCTTCTTCATCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGGAGTGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTCTGACCTTCCCACTACCAATGGAGCATATCCTTGA 1020 0.4755 MIQEMLGGASASHIPGERKISINNGGGGRALLLTPPTSSSSPSCTTSITTSTATATATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGGMSNSVAKQTATKMKAVASELGRSPQGLFDQELPQTPILWGSPQNSQLMALLRATQNQNPNPNPSPMSISVKGEGNLMGSHSHMVSTESLLANGLLNPRTSLGFDDGRVGEALPSLGLCSSFWRNNQDQTQQQNNGFVVGEHQSSGVQELYHKLRSSSSVNYWGSDNSPVFLSNMASSSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTNGAYP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0508 339 Pfam Dof domain, zinc finger 65 121 IPR003851 GO:0003677|GO:0006355
Gso11g0508 339 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 15 337 - -
Gso11g0508 339 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Gso11g0508 339 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Gso11g0508 339 MobiDBLite consensus disorder prediction 1 50 - -
Gso11g0508 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 337 IPR045174 GO:0003700|GO:0006355
Gso11g0508 339 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0508 Gso-Chr11 4530062 4531753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0508 33 122 C2C2-Dof Transcription Factor Family AT5G65590 62.222 1.28e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g0508 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0508 - - gmx:100800420 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1570 1 52360386 52362050 Gso11g0508 11 4530062 4531753 GST
Gso11g0508 11 4530062 4531753 Gso17g1528 17 20819025 20820654 PCT
Gso17g1528 17 20819025 20820654 Gso11g0508 11 4530062 4531753 PCT