Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1858 ATGGCGGCAGCTTCCTCATCCACTCCATTTTTGGGAATCAGAGAAGAAAGCCCTCAGATTACAACACACCATCAACCCTCCACAGTTTCTCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATATCCAGATGCAGAGGTGATAAAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTGTGTCCCGAGCCCACTTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAACACTACTATCGCAAACACGGTGAAAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCAAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTTTGTGATGCGCTAGCACAAGAGAGTGCAAGATTCCCCGGTGGCTTAAACCCTTTGGGGACTCATTTGTTTGGCACAAACCACACTACTAGTTTAAGCCTATCCCAAGTGGGTAACCAACTTTCCCAAGTTCAAAAGCAGAACCAAACCGCCACTAATTATAACAGCATTTTGCGCCTTGGCAACAATAATGTTGGTGCAGCAGCAACAAAGTTTGAGCACTTGATTCCACCTCTAAACCATTCTTCATTTGGACACTCACCACAATCAATGCCTTCCTCAGCTTTCTTCATGAATGACAACACAAATCAAGCATTATTTGAAGAACACCAATCACAACTACAAGGCCTAATGCAACTCCAAGATCTTCAAGGCAACACAAACAACTCTGATTCTTCATCAGTAGGTCCTCCTAATTCCAATCTTTTCAACCTCAGCTTCTTCCCAATAAGTAGCAATATTGGCACTGGCACCATAATACCAGGTCAATTCAACAACATAAGTGGTAGTAACCAAGGAACAACAACAACAACAACAACAACACTCTATGGCAATTCAATAGAAAACGAGTCATCCCCTCATGCTGGATCGAGTTTTTCTTCTATCTTTGGCAATTCAATAGAAAATGCGTCATCCTCTCATATGTCTGCCACTGCGTTGCTTCAACAAGCTGCTCAAATGGGTTCAACCACAACCACAACCACCAACAACGGTTCTTCTTTACTTGGAGGAATGTGTACTAACAATAGTTCCAAAGCTGAAAATGACCACCACCACAATCTTCAAGGGTTGATGAACTCTATTGCCAATGGAAACACGTCCTTGTTTGGGAGCATGCAAGGGAACGAAAACAACCTTTGTGGCTTTCACAACGTGGATGAGTCCAATAACAATAAGTTGCCCCAGAATCTTAGTGTAAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGATGACAAACATGAGTGGTGGATTTTCACAAAGAGAACAACAACAACATGTCACAGGTACTATGAGCTCTTTGGACCATGACCTAAAGTCAGCACAGTCATATCGTCATTTTGGAAAGTCAACGTTGCAATAA 1668 0.4299 MAAASSSTPFLGIREESPQITTHHQPSTVSPTTAPQKKRRNQPGTPYPDAEVIKLSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARFPGGLNPLGTHLFGTNHTTSLSLSQVGNQLSQVQKQNQTATNYNSILRLGNNNVGAAATKFEHLIPPLNHSSFGHSPQSMPSSAFFMNDNTNQALFEEHQSQLQGLMQLQDLQGNTNNSDSSSVGPPNSNLFNLSFFPISSNIGTGTIIPGQFNNISGSNQGTTTTTTTTLYGNSIENESSPHAGSSFSSIFGNSIENASSSHMSATALLQQAAQMGSTTTTTTNNGSSLLGGMCTNNSSKAENDHHHNLQGLMNSIANGNTSLFGSMQGNENNLCGFHNVDESNNNKLPQNLSVNFGGSDKLTLDFLGVGGMMTNMSGGFSQREQQQHVTGTMSSLDHDLKSAQSYRHFGKSTLQ* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1858 555 MobiDBLite consensus disorder prediction 1 40 - -
Gso10g1858 555 MobiDBLite consensus disorder prediction 418 439 - -
Gso10g1858 555 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 526 - -
Gso10g1858 555 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Gso10g1858 555 SMART c2h2final6 66 88 IPR013087 -
Gso10g1858 555 SMART c2h2final6 142 162 IPR013087 -
Gso10g1858 555 SMART c2h2final6 107 137 IPR013087 -
Gso10g1858 555 MobiDBLite consensus disorder prediction 1 50 - -
Gso10g1858 555 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Gso10g1858 555 Gene3D Classic Zinc Finger 49 116 - -
Gso10g1858 555 MobiDBLite consensus disorder prediction 418 445 - -
Gso10g1858 555 Gene3D Classic Zinc Finger 120 198 - -
Gso10g1858 555 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 526 - -
Gso10g1858 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Gso10g1858 555 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1858 Gso-Chr10 45369359 45373935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1858 36 518 IDZ Gene Family AT2G02070 46.332 2.98e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g1858 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1858 K25870 - gmx:100795090 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1486 20 45283732 45288287 Gso10g1858 10 45369359 45373935 GST