Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1583 ATGCAGAATTCGCAGCAAGAATGCAAGAAAAAGGAGATGGTGGTGAAACCAATAGAAGATATAGTGGTGACAAATACTACATGTACAAAGGCTGCAGTAGGTTCTGTAGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTATTAATTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGACCCTCAGGAACATCCCTGTAGGAGGTGGCTCTAGGAAGAACAAGAGATCTTCAGCTTCTTGTAGTAACAATAGTCATCACAATGACAATAATTCAACCAATAAGAAGCTTTCTGCAGATCTGGTCATCACACCTCCAACTTTGTCACACACTACTCAAAACCCTAAGAGCAATGATAATAGTATTATTCATCAAGGCCAAGATCTCAATTTGGCTTTCCCATCCACCACCACCACCACCTCAGATTTCAGAAAAATCTCTGAATTGGTCCAACAAAATAACAACAACAATAGTAGCAACAACAGCATGTCAGCTTCTTCTTCAACCACAACTACAACTACTTCCACTTCTCATCACCTTTCTGCATTAGAGCTTCTTACTGGGATCACTTCTAGTTCCAGTACTGGTTTGAGTACTTCTTTCATGCCTATTCCAGTTCCATCTAATCCAAATTCTATCTACACTTGTGGATTTCCTCTGCAAGATTTCAAGCCAGGAACCTTGAATTTCTCTTTAGATGGGATTGGAAAGGGGTACACAAGCCTTCAGAATGTTCATGGTGGGAGGCTCTTGTTTCCATTTGAGGACCTAAAACAGGTTTCTAGCACCACCACAATGAATCAGACGCAACAAGGGGATTCAACTGGGTATTGGACTGGAATGTTAGGCGGAGGATCATGGTTTAATTGGAGCTGTCAGTTGTATATAGCAAGATCCGCGTTAAAATGTGTTATGATCATGATTCATGAATAG 1011 0.4135 MQNSQQECKKKEMVVKPIEDIVVTNTTCTKAAVGSVERKPRPQKEQAINCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSNNSHHNDNNSTNKKLSADLVITPPTLSHTTQNPKSNDNSIIHQGQDLNLAFPSTTTTTSDFRKISELVQQNNNNNSSNNSMSASSSTTTTTTSTSHHLSALELLTGITSSSSTGLSTSFMPIPVPSNPNSIYTCGFPLQDFKPGTLNFSLDGIGKGYTSLQNVHGGRLLFPFEDLKQVSSTTTMNQTQQGDSTGYWTGMLGGGSWFNWSCQLYIARSALKCVMIMIHE* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1583 336 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Gso10g1583 336 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Gso10g1583 336 MobiDBLite consensus disorder prediction 89 123 - -
Gso10g1583 336 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Gso10g1583 336 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 25 310 - -
Gso10g1583 336 MobiDBLite consensus disorder prediction 178 202 - -
Gso10g1583 336 MobiDBLite consensus disorder prediction 97 123 - -
Gso10g1583 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 310 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1583 Gso-Chr10 42312123 42327209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1583 11 313 C2C2-Dof Transcription Factor Family AT4G24060 41.261 1.03e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso10g1583 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1583 - - gmx:778112 555.444