Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0719 ATGGAGAGTGGGTGGAAGCCTGAGGTTGAGATATCACCAAATTGCCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTCCGAAATGTGCCTGTTGGAGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGACCCTATTGAGACAATCCATTGATGGTTTCACTTTCAAAAATTCACTACCACCTTGTGGCAATGTCACAGATCATAATAATAACCCTATTGGGCATTCTTATGATCCTAGAATAAGAACTTCTTCAGCTTCTAGCTCCTCTTCAGTGGTGAGTGATGGACCTCATATTGATCTTGCTCTAGTTTATGCAAATTTCCTCAACCAAAAGCCCAATTCTGAAGCTAGGGTTGAGAGTACTAATCCAGATCAAGTGCAAACAGTTTTTTATCCTTCTCTAGAAAACAATTCAAGGCTATCAAACACAGTTGTTGTTGGACCAAATACTTTGCCTGAAGAACTTGGTCTCACTGGGTGTTTGAATCTTCCTGAACAACAACCACAAACACATTCTAGTGAGGCTAATAATAATCATAACCAAATGTGCTATGGTGAGTTCAACACTATGCAGACACTTCATCAAAAAGATGGAATTGATCAGCAATGTAGTAATCATGGTGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCTGGTGAAGAGGAAGTCTCACACGATCATCACATGATGTGGTCAAATTCTGAGATGATGATAAATCATCATCATGCATTTCAAGTCACACAACCTCCACTTCTTGGACCTGATGTTCATGATGCAGACTTGTTAATAGGCAATTGGAGCTCCTTTGATTTGCCAAGAGATGCTTCTTTTTCCAGGCCTTGA 930 0.4172 MESGWKPEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKNSLPPCGNVTDHNNNPIGHSYDPRIRTSSASSSSSVVSDGPHIDLALVYANFLNQKPNSEARVESTNPDQVQTVFYPSLENNSRLSNTVVVGPNTLPEELGLTGCLNLPEQQPQTHSSEANNNHNQMCYGEFNTMQTLHQKDGIDQQCSNHGGGAMNFELPPLPGEEEVSHDHHMMWSNSEMMINHHHAFQVTQPPLLGPDVHDADLLIGNWSSFDLPRDASFSRP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0719 309 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Gso10g0719 309 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Gso10g0719 309 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Gso10g0719 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 305 IPR045174 GO:0003700|GO:0006355
Gso10g0719 309 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0719 Gso-Chr10 9955358 9956712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0719 5 304 C2C2-Dof Transcription Factor Family AT3G52440 39.617 9.21e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso10g0719 zf-Dof 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0719 - - gmx:100787193 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1661 2 39157071 39157994 Gso10g0719 10 9955358 9956712 GST
Gso19g1679 19 45709055 45710023 Gso10g0719 10 9955358 9956712 PCT
Gso10g0719 10 9955358 9956712 Gso19g1679 19 45709055 45710023 PCT