Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02028 ATGGACACAGCTCAATGGCCACAGGAGATGGTGGTGAAACCAATAGAAGATATAGTGGTGACAAATACATGTCCAAAGGCTGTGGAAAGTAAGCCAAGGCCACAGAAGGAACAAGCAATTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGAACTCTCAGAAACATCCCTGTAGGAGGTGGCTCTAGGAAGAACAAGAGATCTTCAGCTTCTTGTTCCACACCTAATAATAGTCACAATAACAATAATTCAACCAATAAGAAGCTTCTTTCTGATCTGGTCATCACACCTCCAACTCTGTCACACACTCAAAACCCTAATAGCAATAATACTATTCATCAAGGCCAAGATCTCAATTTGGCTTTTCCATCCTCCACCCCAGATTTCAGAAAAATCTCTGAATTGGTCCAACAAAACAACAACAACAACAATAGTAGCAACAACAGCATGTCAGCTTCAGCTTCTTCTTCTTCAACCACAACTACAACTTCCACTTCTCACCTTTCTGCATTGGAGCTTCTTACTGGGATCACTTCAAGTTCCAGTGCTGGTTTGACTTCTTTCATGCCTGTGCCGGTTCCATCTGATCCAAATTCTATCTACACATGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTGGATGGGATCGGAAACGGGTACACAAGCCTTCAGAATGTTCAAAGTGGGAGGCTCTTGTTTCCATCTGATGACTTAAGACAGGTTTCTAGCTCCACCATCACCACAATGGATCAGAAACAACAAGGAGATTCAACTGGGTATTGGACTGGAATGTTAGGCGGAGGATCATGA 906 0.4283 MDTAQWPQEMVVKPIEDIVVTNTCPKAVESKPRPQKEQAINCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSTPNNSHNNNNSTNKKLLSDLVITPPTLSHTQNPNSNNTIHQGQDLNLAFPSSTPDFRKISELVQQNNNNNNSSNNSMSASASSSSTTTTTSTSHLSALELLTGITSSSSAGLTSFMPVPVPSDPNSIYTCGFPLQDFKPTLNFSLDGIGNGYTSLQNVQSGRLLFPSDDLRQVSSSTITTMDQKQQGDSTGYWTGMLGGGS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02028 301 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Gma20g02028 301 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Gma20g02028 301 MobiDBLite consensus disorder prediction 81 147 - -
Gma20g02028 301 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 298 IPR045174 GO:0003700|GO:0006355
Gma20g02028 301 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 298 - -
Gma20g02028 301 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Gma20g02028 301 MobiDBLite consensus disorder prediction 166 190 - -
Gma20g02028 301 MobiDBLite consensus disorder prediction 89 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02028 Gma-Chr20 47510271 47512120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02028 1 301 C2C2-Dof Transcription Factor Family AT4G24060 44.444 2.09e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma20g02028 zf-Dof 3.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02028 - - gmx:100782268 548.51