Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01140 ATGTCTCAGAAAGAGAAGGGTCCGGGTATCAGGCTATTTGGAAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCAAACTCTGGACCCACGGATACTTGCTGCAGCATAAAGAAAACAGAACTCAAAATACCTAGTGAATGTGGAGAAAACTCTGAGCAACAAGAAAATTCTTCTGATTCAAGGGATAGTAAACAAGAGTCCCAACATAAAGTGCAGGAAAATGAGCCAATTGTAAATCCCAAGCCTGTGGAAGATAATATGGAGACTGGTAGCTCTGATCAAGATAAAGTCTTAAAGAAACCCGACAAGATTCTTCAGTGCCCACGATGCAACAGTATGGACACCAAGTTTTGTTATTTTAATAACTACAATGTCAATCAACCTCGACACTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAATAAGCACCTAGCCTCTCAATACCAACACATTATCGTAACCTCTGATGGAATTCCAGCCTCCAGGCTAGAAACCACAGACTCGTCTGGTCTCCAACAGCAACATATTGCTAGTCTTGAATCCTCAGTTTCTTTCAGGTCTTCAGCAGATAATTGCACCATGTTGAAATTTGGTACCGATACCCCTCTTTGCAAATCGATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGATGTGCTGATGCAAGTTCTATCAGCTGTGTAGAGTATAGAGGGGAACCATCCTTATGTGGATCTTCTGTGATGACTAATGGTGCTCAAGGAAATGAATTATCAGAACATAATACATCAAATTGGTTGCAATGTTACCCTGTTCCTCCATGGGTATTACCTTATCCAGGTTGGAATAATGTGAATTCCATGGAAGCGGTTCATCGATCTTCAGCACCAATGTGCAATCCATATAATAACACTGGTCCTACAGCAATGCAATGGTGTCCCACACCAATGGTTGCAATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAATTTGTACCACCATCATACTGGAGTGGAACGCCACTTTGGAATGCTGGAACTGGGGCAGTGTCAATAGGATCCAATGCTTGCCTTTCGCCGACTTCCTCGACTAATAACAGTTGCTGCTCAGGCAATGGCTCACCAACACTTGGAAAACACACTAGAGATACAGTTTGCACTGATGAAGAGAAATCAGAAAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTGATGCCCCAAATGAGGCCTCAAAAAGTCCTATAATAAGAGCTACATTAGCTATCAAGCTTGATAAGCAGCAATTTGTATCAAATGGTGATATTTTGAAAAAAATTGAACCAAAAGAAGGCAAAGATCGTGTGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCGGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCTTATAG 1452 0.427 MSQKEKGPGIRLFGRKIPVPECQIPANSGPTDTCCSIKKTELKIPSECGENSEQQENSSDSRDSKQESQHKVQENEPIVNPKPVEDNMETGSSDQDKVLKKPDKILQCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYQHIIVTSDGIPASRLETTDSSGLQQQHIASLESSVSFRSSADNCTMLKFGTDTPLCKSMDSMLNLRDQRRCADASSISCVEYRGEPSLCGSSVMTNGAQGNELSEHNTSNWLQCYPVPPWVLPYPGWNNVNSMEAVHRSSAPMCNPYNNTGPTAMQWCPTPMVAIPGMCPPSIPLQFVPPSYWSGTPLWNAGTGAVSIGSNACLSPTSSTNNSCCSGNGSPTLGKHTRDTVCTDEEKSEKCVLVPKTIRIDAPNEASKSPIIRATLAIKLDKQQFVSNGDILKKIEPKEGKDRVLGASQILEANPAAISRAHAFQESL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01140 483 MobiDBLite consensus disorder prediction 56 72 - -
Gma19g01140 483 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Gma19g01140 483 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Gma19g01140 483 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Gma19g01140 483 MobiDBLite consensus disorder prediction 46 98 - -
Gma19g01140 483 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 482 - -
Gma19g01140 483 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01140 Gma-Chr19 39853502 39856023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01140 8 482 C2C2-Dof Transcription Factor Family AT5G39660 34.264 3.26e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma19g01140 zf-Dof 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01140 - - gmx:100813787 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01140 19 39853502 39856023 Gma19g01140 19 39853502 39856023 ECH