Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00205 ATGTTGGAGTCAAAAGACTCGACGATGAAGCTCTTCGGGAAGACGATCCCTGCGCCGGAGATCTCCGCCGGAGCTCCGGCATTGTCTTCTGGTGATGCTGATGCTGTTGGTGTTGTTCAGAACCATGGTTCTTCAAGTGTCAATGGGGATGGTGAAGAGCACGAGATTGAGCAGGACATAATGGGAGAGGAAACAACTGAGAGTGAGAAGGAAGATGAAGTGACCAATCTTGATACTGTCTCAAGACCAGGGGAAGTGTCTATTAACCCCTCTACCAAGAAGGAGGATCTTACATTGAAAACTTCAAAAAAGACCGAACAAGAACAAGGTGAAAATTCCCAAGATAAAACACTGAGAAAGCCGGACAAAATACTGCCTTGCCCCCGCTGCAATAGCATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGCCATTTCTGCAAGAATTGTCAGAGATACTGGACTGCCGGTGGAGTGATGAGGAATGTTCCTGTGGGTGCTGGTCGCAGGAAGAACAAGAATTTTACTTCTCAGTATCGTCAGATAACTGTTCCTGAAGCAGCACTCTTGAGTTCTCAGCCGGACTTGCCAAATGGAGTCAGTCATCCTTCCTTGAACTGTAATGCCACACTCCTTGCATTTGGGTCTGATACACCCTTGTGTGAATCAATGACATCTGTTTTGAACCTTGCTGAAAAAGCAGTGAACAATTCCACAACAAATGGATTTAATGGCTCAGAAGAACTAGAAATTCCTTTTGCTTATGTTGCTGGAGAAAAAGTGAATGATGATTCCAATAAATCTTCTGACATGTCAACAAAGCCAATGGAAGGTGAAACCACCAATAGGTCCCAAGAACAAGTCATAGAGAATTGTCATCCCTTCCCACCTCATGCTCCCTACTTTCCTGGTGCCCCTTGGCCTTTCCCATGGAATCCAGCACTGTGGAACTCCCCGGTACCATCACCACCTGCTTTTTTCCCACAAGGATTTACCATGCCTCTCTATCCTGCAGCAGCTTATTGGGGTCTTACTATACCGGGTGCATGGAGCATCCCATGGCTAGCGCAACCATCATTACCAAATAGCACAGTGTCTAACTCTGGTCCAGACCCCATTGCCCGAACCATAGCCATGTCTTGA 1158 0.4637 MLESKDSTMKLFGKTIPAPEISAGAPALSSGDADAVGVVQNHGSSSVNGDGEEHEIEQDIMGEETTESEKEDEVTNLDTVSRPGEVSINPSTKKEDLTLKTSKKTEQEQGENSQDKTLRKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGVMRNVPVGAGRRKNKNFTSQYRQITVPEAALLSSQPDLPNGVSHPSLNCNATLLAFGSDTPLCESMTSVLNLAEKAVNNSTTNGFNGSEELEIPFAYVAGEKVNDDSNKSSDMSTKPMEGETTNRSQEQVIENCHPFPPHAPYFPGAPWPFPWNPALWNSPVPSPPAFFPQGFTMPLYPAAAYWGLTIPGAWSIPWLAQPSLPNSTVSNSGPDPIARTIAMS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00205 385 MobiDBLite consensus disorder prediction 96 123 - -
Gma19g00205 385 PANTHER CYCLIC DOF FACTOR 2 1 369 IPR045174 GO:0003700|GO:0006355
Gma19g00205 385 MobiDBLite consensus disorder prediction 273 290 - -
Gma19g00205 385 MobiDBLite consensus disorder prediction 56 71 - -
Gma19g00205 385 MobiDBLite consensus disorder prediction 80 95 - -
Gma19g00205 385 MobiDBLite consensus disorder prediction 38 123 - -
Gma19g00205 385 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Gma19g00205 385 MobiDBLite consensus disorder prediction 267 290 - -
Gma19g00205 385 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 369 - -
Gma19g00205 385 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Gma19g00205 385 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00205 Gma-Chr19 2685498 2688716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00205 6 373 C2C2-Dof Transcription Factor Family AT5G39660 37.755 5.72e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma19g00205 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00205 - - gmx:778120 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00205 19 2685498 2688716 Gma06g01750 06 17801036 17804323 ECH
Gma19g00205 19 2685498 2688716 Gma04g01634 04 44438739 44441671 ECH
Gma19g00205 19 2685498 2688716 Gma05g00253 05 2303134 2305993 ECH
Gma19g00205 19 2685498 2688716 Gma17g00950 17 8101698 8105003 ECH
Gma19g00205 19 2685498 2688716 Gma19g00205 19 2685498 2688716 ECH
Gma01g00454 01 5866252 5870143 Gma19g00205 19 2685498 2688716 ECH