Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01605 ATGGTTTATACTTCTATCCCATCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCAAGGCAACAACACTGCTGCCAGCTCCCACCTTATTCTGCCACCACCAATACAACCGCCGCCGCCTCCGCCATCGCAACCTCATGGACTCAGCGGTAGCACTACCGCCGGGTCCATCAGGCCCGGTTCGATGGCAGATAGAGCGAGGATGGCCAACATACAGGAAGCTCCACAAAAGTGTCCAAGATGTGAATCCACCAACACGAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGTCACTTCTGCAAGGCCTGCAGAAGGTACTGGACACGTGGCGGGACCTTGAGGAATGTCCCCGTAGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCAGCAGCAACACCAGGTCGCCGGCAAACTCCGATCGCCAAACCGCGAGTGCCGGCTCCGCTTCAACCACCAGTGGCTCCTCTTCTGCTGACTTGGTGGCCAGCCTCGGTGGCGGCACCGGGGTGCCACCGTCTCTTAGGTTCATGGCTCCATTGCATCAACTTGGGGACCACCACCACCTTGGTGGTGGTGGAGGAGAAATAGGGTTAAGCTATGGCTTGAACTATGGCGCAATTTCTGGTCCAATGGGAGGAATAGGAGACTTGAATTTCCATATAGGAGGCACTTTGAGTGGGGGTGGTTCTATGTTATCTGGTTTGGACCAATGGAGGGTTCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTACTTCATCACATGGGTTGTACCCTTTTGAAGGTGCTAGTGGCAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGCATTATGTCTCAGCTTGCTTCTGTGAAAATGGAAGACAATCGTCATCATCATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGGGTCAATAATAACCCTAACACAAATGAGCAATATTGGAGTGGTGGTGGTGGTGCCACTTCTACTTGGACTGATCTTTCTGCTTTCAGTTCTTCTTCCACTACTAGTAATAACGCACTATAG 1092 0.5192 MVYTSIPSYIDPANWQQQQPNHQQQGNNTAASSHLILPPPIQPPPPPPSQPHGLSGSTTAGSIRPGSMADRARMANIQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGTLRNVPVGGGCRRNKRSRGSSSSNTRSPANSDRQTASAGSASTTSGSSSADLVASLGGGTGVPPSLRFMAPLHQLGDHHHLGGGGGEIGLSYGLNYGAISGPMGGIGDLNFHIGGTLSGGGSMLSGLDQWRVPQTHQFPFLSGLEATSSHGLYPFEGASGSDGYGGTPIKVSTSGIMSQLASVKMEDNRHHHHQELGLPRQFLGVNNNPNTNEQYWSGGGGATSTWTDLSAFSSSSTTSNNAL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01605 363 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Gma18g01605 363 MobiDBLite consensus disorder prediction 135 174 - -
Gma18g01605 363 MobiDBLite consensus disorder prediction 37 52 - -
Gma18g01605 363 MobiDBLite consensus disorder prediction 16 66 - -
Gma18g01605 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 358 IPR045174 GO:0003700|GO:0006355
Gma18g01605 363 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 358 - -
Gma18g01605 363 MobiDBLite consensus disorder prediction 16 35 - -
Gma18g01605 363 MobiDBLite consensus disorder prediction 123 176 - -
Gma18g01605 363 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Gma18g01605 363 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01605 Gma-Chr18 44811188 44813000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01605 1 355 C2C2-Dof Transcription Factor Family AT2G37590 40.957 2.37e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma18g01605 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01605 - - gmx:100816936 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01605 18 44811188 44813000 Gma18g01605 18 44811188 44813000 ECH