Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01370 ATGGCAACACCAAAAGACCAAGATGCCACACAAGGCCGAAAAATCACCACCACAACAACAAGGCCAGCGCCGGAACAAGGCGTAAAGTGCCCGCGATGCGACTCATCCAACACAAAGTTCTGCTACTACAACAACTACAGCCTCACCCAGCCCAGGCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAACGGCGGAGCCTTGCGCAGCGTCCCGATAGGCGGCGGCTGCAGGAAGAACAAAAGGGCCGTCGTCAAGCCCTCTTCCTCTTCGTCATCTTCATCACCAAGACTCTCAACCACCGAATTCAGCCTTCGCGGCCTCAACGTTCCGCCCTCGGTTGAATTCAACCTCGGCGCGTTGCCCTTCCCCTCGAGGCTCAACACAAACCACCACATTCCAACAATCATAAACACAGGGTTGTTCAACAACAACCAGTTGTCGCCTTTCCTGGACGTTAAATCAGCTTTGTTTCAACTTGACGCTCCTCCAGCTGCTCTGTCAAACTCCTTGATGGGCATTGCCCCGCCCAGCGCCCAGAACAACAACTTCTGGGCGCTGGGTCGGTCTCAAAGCTCGACACTGTCTGATCCATTAAACAGTACAATGCAGTCCATGCAGCAATCTCTGAATGTTCATAGCAGCCTTGCTTCTTCAATTGAGTCACTGAGCTGCGTCAACCGGGACTTGCACCTGAAGATGCAGCAGCAGCGTTACGCGACAATGATGTCCGGTGGGGACACCCACCACAAGGGTGATGAAAACAGTGGCGTTTCGTTTCCTCAAACGGTTAATGGGTTCGAGAATCAAAAACTGGTGATGAACCCCGTTATGTTTCAGAAGCCAGTAGAGAGCTTGCCAGCCGGCAGTGCCGTAACAGAAGGCCCAAGTGGGGCTTCAGTTACAACAGTGGCACCACCCACCGAATGGTTCTTTGGGAATTCTTCTTTTCCCTCAACAGGTAATGGTGGTGGCAATGGCAACAACAACATTAACATTAATATTAATGATGCAAACAACAATTGGAGTGATGCCCTTGCTTGGGGGAATTTTCAGCAGCAGCAACAACAATACAGTGCTTTGCCCTAG 1089 0.517 MATPKDQDATQGRKITTTTTRPAPEQGVKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRSVPIGGGCRKNKRAVVKPSSSSSSSSPRLSTTEFSLRGLNVPPSVEFNLGALPFPSRLNTNHHIPTIINTGLFNNNQLSPFLDVKSALFQLDAPPAALSNSLMGIAPPSAQNNNFWALGRSQSSTLSDPLNSTMQSMQQSLNVHSSLASSIESLSCVNRDLHLKMQQQRYATMMSGGDTHHKGDENSGVSFPQTVNGFENQKLVMNPVMFQKPVESLPAGSAVTEGPSGASVTTVAPPTEWFFGNSSFPSTGNGGGNGNNNINININDANNNWSDALAWGNFQQQQQQYSALP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01370 362 MobiDBLite consensus disorder prediction 1 24 - -
Gma18g01370 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 257 IPR045174 GO:0003700|GO:0006355
Gma18g01370 362 MobiDBLite consensus disorder prediction 84 99 - -
Gma18g01370 362 MobiDBLite consensus disorder prediction 79 99 - -
Gma18g01370 362 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Gma18g01370 362 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Gma18g01370 362 Pfam Dof domain, zinc finger 27 82 IPR003851 GO:0003677|GO:0006355
Gma18g01370 362 PANTHER DOF ZINC FINGER PROTEIN DOF5.7 15 257 - -
Gma18g01370 362 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01370 Gma-Chr18 27860555 27861643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01370 25 331 C2C2-Dof Transcription Factor Family AT5G65590 35.093 1.70e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma18g01370 zf-Dof 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01370 - - gmx:102663483 680.633