Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00321 ATGGCTCCTCCCTCAGATATCAATCATCTTTCTCACCCTTGTATATACGGGGACTTTGTTTCTTCATATACAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAACATTGGGTCCAGTAGAGGAAGGGGTGGTGGTCGCCATCTGCAGCAGCCTGTAGAGGAAAACATGGTTTGGCCAGCTCCAGCTAAATCCTTGGATGATTGTGCTAGATCTCGGAAGGAGGAAGAGGATCTAGATCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACTGGATATAGATGGCGAACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAAGATCGCATGTTCTCATCTGCCCATCCACCATATGCCCCTGTACCTTTTTATACCCGGGGATATGGTATGCAATCGCATAATAGAACATGTGGAGGGTGCAACCAAGAGATACTCTATGGCAATTGTTTAGGAGTTGGTCATAATTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAAACCTGTTTTAAGGAATTGACACACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTATTGGAATCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGTCACGGGATGAAAGATACTATAGATTGGAAGATGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAACGGACACTGGTGAATGTCAACCCCTTTATCATGCTATCAGAGACTATTATGAAGGAATGAATATGAAAATTGATCAACAAGTCCCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGCTTCCATCACTTACCAGAAACAAGGGGATTATGCCTTTCAGAAGAGCAAACTGTCACAAGTGTATATAGATGGCCAAAAATTGGAGGCCATCGATTAATAGGCATGAGATCTCAAGCTCAACGGCTGCCTAGAAAGTGTGAAGTTACAGCTATTCTTGTTCTGTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCACATGAGTTGATGCATGCTTGGTTACGCCTCAAAGGTTACCAAAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAGGTCATGTCATGTGCTAGAACCATGTCATCAACATCAGCAGCAGCTTCTTCCTCCTCCTACTCTAGTTCATCAAAGAAAGGTGTGAAATCTCATGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCAGCCAATGAGGCTGTGAATAAATATGGTTTGCGTTGCACTCTGGAGCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1530 0.4203 MAPPSDINHLSHPCIYGDFVSSYTERKSGFMKWFGKIFNIGSSRGRGGGRHLQQPVEENMVWPAPAKSLDDCARSRKEEEDLDHAIALSLGENFKRPTGYRWRTGTDEDYAKALQDRMFSSAHPPYAPVPFYTRGYGMQSHNRTCGGCNQEILYGNCLGVGHNYFHPDCFRCHSCRYPITEREFSLSGKHPYHKTCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRDERYYRLEDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMKIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVYRWPKIGGHRLIGMRSQAQRLPRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSPEVEEGICQVLSYMWLDAEVMSCARTMSSTSAAASSSSYSSSSKKGVKSHVENKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGHFPL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00321 509 Pfam LIM domain 145 198 IPR001781 -
Gma18g00321 509 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Gma18g00321 509 CDD LIM_DA1 145 197 - -
Gma18g00321 509 SMART lim_4 144 196 IPR001781 -
Gma18g00321 509 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Gma18g00321 509 PANTHER PROTEIN DA1-RELATED 2 20 509 IPR045218 -
Gma18g00321 509 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 509 - -
Gma18g00321 509 Pfam Protein DA1 294 504 IPR022087 -
Gma18g00321 509 Gene3D Cysteine Rich Protein 139 202 - -
Gma18g00321 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00321 Gma-Chr18 2653739 2658613 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma18g00321 DA1-like 5.8e-97 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00321 18 2653739 2658613 Gma18g00321 18 2653739 2658613 ECH
Gma18g00321 18 2653739 2658613 Gma11g02261 11 37927950 37933164 GST
Gma18g00321 18 2653739 2658613 Gma14g02114 14 52258396 52269960 PCT
Gma18g00321 18 2653739 2658613 Gma02g02377 02 49838914 49843576 PCT
Gma14g02114 14 52258396 52269960 Gma18g00321 18 2653739 2658613 PCT
Gma02g02377 02 49838914 49843576 Gma18g00321 18 2653739 2658613 PCT