Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02453 ATGGGAGTCCCAGCGTTCTACCGATGGCTGGCGGAGAAGTATCCGATGGTGATTGTGGACGCGATCGAAGAGGAAGCGGTCGTAATCGACGGCGTTCAAATCCCCGTCGATACGAGCAACAAGAACCCTAACAACATCGAATACGATAACCTCTATCTCGACATGAATGGCATCATTCATCCTTGCTTTCACCCCGAGGATAGGCCGTCTCCGACGTCGTTTGATGAGGTGTTTGAGTGCATGTTCGACTACATTGACAGACTATTCGTCATGGTGCGGCCGCGGAAGCTGCTCTATATGGCTATTGACGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAGCGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCAGCTGATGCGGCTGCTGAAGAAACAAGGTTAAGGGAGGAATTTGAGAAGGAGGGAAGAAAGCTTCCTCCTAAAGGAGAGTCACAGACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACACGACATTGCCTCTATGGTTTGGATGCTGATTTGATTATGTTGGCATTGGCTACCCATGAAATTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGTCATATGGCTGCAAACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGGCGAAAAAGCCCTTCCAGTTCCTAAATATATGGACTCTGAGAGAATATCTGGAGTATGAGATGAGAATACCTAATCCTCCTTtcgagattgattttgaatgcattgtggatgattttatcttcatgtgtttttttgtcggcaatgattttctaccacacatgcctacactagagattcgtgagGGTGCAATTAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTCGGTGGTTATTTAACCAATGGAAGCACGATAAATTTGAGCAAGGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACAGAAAGAATAAAGCGTGAAAAGGCACAGGCAAGGAGGGGAGATGATGCTGAGCCTCAATTTAAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAAATCCTTCACCATTTCAACCATCTGGGCATTATAATTCTCAAGTGTCTGCATCAGTTAGAAAAGACAATAAAGAAGCCTTTGAGAGGCCTTATAAAGTTGCTAGGGTTTCTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAATAATCTTGAAATAGATGCTCAAGATAATAAAGATGAATTGAAAACAAAATTAAAGGAGATACTTCGTGAGAAATCTGATGTATTCAACTCAAAGAATGCTGAAGAGGATAAGATTAAATTGGGAGAACCTGGCTGGAAAGAGAGGTATTATGATGAAAAATTTTCTGCcaaaactcctgaggaacttgaagcgatacgtaaagatgttgtcttgaaatacactgaagggctatgttgggtgatgcactattattatgaaggtgtttgttcttggaattgGTTTTATCCTTATCACTATGCTCCCTTTGCGTCTGATCTCAAGGGCCTTGGTGAACTTGATATTAGCTTTAAGCTGGGTACCCCATTCAAACCATATGACCAGCTTCTAGGGGTTTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCATATAGGAGACTTATGACTGATCCAAGCTCACCAATCATTGATTTTTATCCAGTTGACTTTGAAGTGGACATGAATGGCAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTGCCATTTATTGATGAAGTGCGTCTTCTTGCAGAAGTTCAAAAGATTGAAAACTTGTTAACACCAGAGGAAAAGCGACGGAATGCTATAATGTTCGACTTGCTCTTTGTGAATTCTTGTCATCCTCTCTCTGCGTGCATAAGTACACTTGACAACAAGTGTAAAAACATGCCCAACAGTGAACGGGCTGTGGTCAAGGAAAAAATCAATCCCAAAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTCGCAAGCATGGAAGATATCATGGACAATCATGTTATATGTGCAATATACAGACTCCCAGATGCACATACACACATTACCCGACCACCTCAAGGAGTTAAATTTCCAAAAAAGATTGTTGGAATTGAGGATTTAAAACCTGAACCTGTTTTGTGGCATGAAGATTCAGGCAGGAGACACCATGCTGAAAATGGGAGGAAAAACCCTCCAGGATCTATTTCTGGTCGGGAGCTTGGGGATGCAGCACACAGACTCATCGTCAATTCCTTACAGGCAAAGGTTGATACTAATGGATACCGCCATCCGCATAATGGTCCTCCTATATCTTATCCTGCACCCATGGGTCATCATCGACAACCATTGCCTTCACATGGTTATGAATCATGCCCGGGATACGTTGCAATGCCGCCACCTATTTCAGCTCCCTCACTCCAAGGCAGACCACAGTTTGCACCTTACAATGCTGTCCCTACTGCTCCGCAGTATGGTTATAATCAACCATACCCTGCGCCACCGGTGGGGTACAATCATCCTCGCCAGCAATCAAATCCTGTCGAAAGAAATGACTATCAACACCCTAGATCACATAATTATGAAAGAAATCACCATCAAGGTAGTGGGGGTAGTTCAAGGCATGGATATCAATCATCAGGAAATAATCACAATGCTAGGTTTAATAATTCACATGGTAGTCACCACAGCCAAAGCTTCCAACCTAGAGCTCATCAGAATTGGACTCCACGAAACAACCCGAGTGGGCACAGGGATCATGGTCAGTATTCGTCCAATCAATATTCTTTGTTAGATAGAAGAGGAAACAGGAATCAAATGCCACCACCTGGTTACAGTCGCAAATAA 3210 0.405 MGVPAFYRWLAEKYPMVIVDAIEEEAVVIDGVQIPVDTSNKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEETRLREEFEKEGRKLPPKGESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGEAIVAKKPFQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFREFGGYLTNGSTINLSKVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDAEPQFKPESLVAVSRFHGSRLASAPNPSPFQPSGHYNSQVSASVRKDNKEAFERPYKVARVSSGATVAAAIVEAENNLEIDAQDNKDELKTKLKEILREKSDVFNSKNAEEDKIKLGEPGWKERYYDEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKGLGELDISFKLGTPFKPYDQLLGVFPAASSHALPEPYRRLMTDPSSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIENLLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMPNSERAVVKEKINPKERDTCSGGMNGYISLCGGEPCPPIFRSPVASMEDIMDNHVICAIYRLPDAHTHITRPPQGVKFPKKIVGIEDLKPEPVLWHEDSGRRHHAENGRKNPPGSISGRELGDAAHRLIVNSLQAKVDTNGYRHPHNGPPISYPAPMGHHRQPLPSHGYESCPGYVAMPPPISAPSLQGRPQFAPYNAVPTAPQYGYNQPYPAPPVGYNHPRQQSNPVERNDYQHPRSHNYERNHHQGSGGSSRHGYQSSGNNHNARFNNSHGSHHSQSFQPRAHQNWTPRNNPSGHRDHGQYSSNQYSLLDRRGNRNQMPPPGYSRK 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02453 1069 PIRSF Exonuclease_Xrn2 1 1056 IPR017151 GO:0004534|GO:0005634|GO:0006139
Gma17g02453 1069 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Gma17g02453 1069 MobiDBLite consensus disorder prediction 838 860 - -
Gma17g02453 1069 Gene3D - 147 389 - -
Gma17g02453 1069 Gene3D - 1 138 - -
Gma17g02453 1069 Coils Coil 122 142 - -
Gma17g02453 1069 Coils Coil 508 528 - -
Gma17g02453 1069 CDD PIN_XRN1-2-like 51 312 - -
Gma17g02453 1069 Gene3D - 617 714 - -
Gma17g02453 1069 Pfam Xrn1 helical domain 325 828 IPR041412 -
Gma17g02453 1069 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Gma17g02453 1069 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Gma17g02453 1069 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Gma17g02453 1069 MobiDBLite consensus disorder prediction 413 432 - -
Gma17g02453 1069 PANTHER 5'->3' EXORIBONUCLEASE 1 981 IPR027073 -
Gma17g02453 1069 PANTHER 5'-3' EXORIBONUCLEASE 1 981 - -
Gma17g02453 1069 MobiDBLite consensus disorder prediction 986 1055 - -
Gma17g02453 1069 MobiDBLite consensus disorder prediction 138 157 - -
Gma17g02453 1069 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Gma17g02453 1069 MobiDBLite consensus disorder prediction 946 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02453 Gma-Chr17 42554479 42566314 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02453 17 42554479 42566314 Gma17g02453 17 42554479 42566314 ECH
Gma17g02453 17 42554479 42566314 Gma14g02124 14 52404940 52416153 GST