Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02450 ATGATGGCTTCCGTTGAAGAAAAGATTAAAACTGGAGGAGTTGGAGGAGGAATGGTTGTTGGGGGTCAAACTCTTGTTGCTGAGATGAAACTGTTGAAAGAAATGCAAGAACATTCTGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCACTACCCCAGGTTGGAAGCCTTGTGTTTTACTTCCCTCAGGGGCATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACATCACAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTTCAGAATGCCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTGCAACCACTGAATTCTGAAAGAGAAGTTTTTCCCATATCTGATTTTGGGCTAAAGCACAGTAAACATCCCAGTGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACGAGCACGCATGGCGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAGCTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATATACCGGGGTCAACCAAAGAGACACCTGCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCACAATTGCGAGTTGGCGTGAGGCGTGTTAATCGTCAGCAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCTCTGGCCAAATACAGAAAATCTGTATTTGGAACTCAGGTCTCAGTTGGAATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTAAGGTGGCCTGGCTCTAAATGGCGCAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGCGATAAACAGAATAGAGTTAGTGTGTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTAAAACGGCCATTACCATCTGGACTTTTGGAAAATGAGTGGGGAACTTTGTTAACAAGACCCTTCATAAGAGTTCCAGAAAATGGAACTATGGAGCTCTCAAACTCAATTCCAAATCTCTACTCAGAACACATGATGAAAATGCTTTTTAAACCCCAGCTGATTAACAATAATGGAGCATTTTTATCCGCCATGCAACAAGAATCTGCTGCTACAAGAGGTCCCTTGCAAGAAATGAAGACCACTCTGGCAGCAGAAAACCAAATGCTGCTTAAAAATCTACATCCTCAATCTATCCCTGACCAACCTAATGCCTTAAACATGCAATCACTGTTGAAAAATGATCAGCCTGAAAAATTTCATCCTCTTGCCAAAATTGATAATCATCTTCCTTCTGGGATAGTTATTGACAAGCCAAAATTAGAATGTGAGGTATTACCTGACCGCGTGATTGACTATCCTTCCATGGAAGGGTGCAACAATGAAAAGGTGGCAGTAAATCCTGTTAACCAGCAAGGCCTAGCAACCCAATTGCCATTCCATAATCAAAACCAGAGTCCACTACTCCCTCAATCCAGTCCATGGCCTATGCAACCTCTGATAGAATCCTCCATGCCCCATCCTCAAATGATTGGTATGGCTCAAGCTGATTCTGCCATGGTAAATGGCCTGTTTCCTCAGCTTGACATTGATGAATGGTTGGCGTATGCTTCTTCCCAACCTTTTGCTGGGCAGAACAGACCAACTGGACCTTTTTCTGACTTGCAAGAACATAACTCACTTCAGCCTCAAGTAGTGAATCCCCCTTTACCTTCAATGAACAATGAAGTATGGGATCATTATGTCAAGAACTTCAAGTTCTTATCTCAAGCAGACCAGCTTACATCCATCTGTCAGCCAGGGATGTATGGCCTCAATGGCGTACCAAGCTCAAATAATTTGAGGGATCTTTCCGCTGAGAGCAATAACCAAAGTGAGATTTGTGTCAATGTTGATGCTAGCAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACGATGAAGGACGGAGAATTTCAGAATCCTCAAGATTGCATGGTTGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACCTCTGCTAGTCTAGCCGAGTCACATGCCTATCCTCTTAGAGACATCCCTGACAACTCCGGTGGCACTTCATCAAGCCATGTTGATTTTGATGAAAGCAGCTTCCTGCAGAATAACTCATGGCAGCAAGTACCTGCACCCATCCGAACCTACACAAAGGTGCAAAAGGCAGGTTCCGTTGGAAGATCAATCGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATCGAATGCATGTTTGGACTCGATGGCCTGCTGAATGACACTAAAGGCTCAGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGTGATGATCCTTGGGAGGAATTTGTAGGCTGTGTCCGCTGCATAAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA 2802 0.4408 MMASVEEKIKTGGVGGGMVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNATLHADKETDEIYAQMTLQPLNSEREVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSGLKRPLPSGLLENEWGTLLTRPFIRVPENGTMELSNSIPNLYSEHMMKMLFKPQLINNNGAFLSAMQQESAATRGPLQEMKTTLAAENQMLLKNLHPQSIPDQPNALNMQSLLKNDQPEKFHPLAKIDNHLPSGIVIDKPKLECEVLPDRVIDYPSMEGCNNEKVAVNPVNQQGLATQLPFHNQNQSPLLPQSSPWPMQPLIESSMPHPQMIGMAQADSAMVNGLFPQLDIDEWLAYASSQPFAGQNRPTGPFSDLQEHNSLQPQVVNPPLPSMNNEVWDHYVKNFKFLSQADQLTSICQPGMYGLNGVPSSNNLRDLSAESNNQSEICVNVDASNSVGTTMVDPSTSSTILDEFCTMKDGEFQNPQDCMVGNLSSSQDVQSQITSASLAESHAYPLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02450 933 SMART B3_2 151 253 IPR003340 GO:0003677
Gma17g02450 933 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Gma17g02450 933 Gene3D - 149 252 IPR015300 -
Gma17g02450 933 ProSiteProfiles PB1 domain profile. 827 911 IPR000270 GO:0005515
Gma17g02450 933 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma17g02450 933 SUPERFAMILY DNA-binding pseudobarrel domain 139 280 IPR015300 -
Gma17g02450 933 SUPERFAMILY CAD & PB1 domains 829 906 - -
Gma17g02450 933 Gene3D - 824 916 - -
Gma17g02450 933 Pfam AUX/IAA family 824 914 IPR033389 -
Gma17g02450 933 PANTHER AUXIN RESPONSE FACTOR 5 32 931 - -
Gma17g02450 933 CDD B3_DNA 150 251 IPR003340 GO:0003677
Gma17g02450 933 Gene3D - 315 387 - -
Gma17g02450 933 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Gma17g02450 933 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 931 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02450 Gma-Chr17 42473359 42479141 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma17g02450 AUX_IAA 5.2e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02450 17 42473359 42479141 Gma17g02450 17 42473359 42479141 ECH
Gma17g02450 17 42473359 42479141 Gma14g02121 14 52335765 52341705 GST