Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02436 ATGGCTGGGTTTTTCTCTCTAGGAAGGCAGAACAAGGCAGAAGAACAAGAGGAAGATCAAAGGGAAGACAACTGTCAATTTTTGTTCAGGAACAACGTTAACGAGGAGATCTACAACAAGGGATTCGAGATATGGCCACAATCCTCGTACCACCACCACCACCAGAACTTGACCAACTTCTACTCCTTCGGTGTGGGCCCTAGTCGCAGAAACAACAACAATAGCTCCTCCAACAACAACGTTAACGACGAAGTTTCTGTGTCTTTCTCGGATGAGTCGAACCGGTTCGGGTTCACCGTGATGAGGTCCGGTGGCGGCGGCGTAGGTGGCGGCGGAATGAACTGTCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTCAACACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGTCAGACTCACGTTAAGAGCACTTGGGTTCCCGCGGCTAAACGCCGTGAACGACAGCAACAACTTTCTGCGTTGCAGCATCAGCAACAGAATCAACAGCCACAGTTTCGTGGAGATCACTCAAAACGACACAGAGAAAACATCGAAGGTGCTGCTGCTGGTTCTCTCGCTTGCGTTCCAGTTCCTATCACCACCACAGGGTTGGAGCTGGGGCAATTTCCACCAGAGCTAAACTCTCCAGCGGTGTTTCGGTGTGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTATCAAACCGCAGTGAACATAGGAGGACACGTTTTCAAGGGAATTCTTTACGACCAAGGAACGGACGGTCCTTACGCGGGTGCAGGTTGTGAGGGTTCCTCCGGTGGCGGTGGCGAAGCTCAGCCACTAAGTCTAATGGCTGCAGCCACAACCACCACCGCCGCCACAACAAGCGGAAACCCTTTTGAGGCTTCACTCTACACGGCTCCGATGAATGCCTACATGGCTGGTTTAAGTTGA 960 0.5208 MAGFFSLGRQNKAEEQEEDQREDNCQFLFRNNVNEEIYNKGFEIWPQSSYHHHHQNLTNFYSFGVGPSRRNNNNSSSNNNVNDEVSVSFSDESNRFGFTVMRSGGGGVGGGGMNCQDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQHQQQNQQPQFRGDHSKRHRENIEGAAAGSLACVPVPITTTGLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTDGPYAGAGCEGSSGGGGEAQPLSLMAAATTTTAATTSGNPFEASLYTAPMNAYMAGLS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02436 319 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 317 IPR007818 GO:0003700|GO:0006355
Gma17g02436 319 MobiDBLite consensus disorder prediction 156 184 - -
Gma17g02436 319 MobiDBLite consensus disorder prediction 163 177 - -
Gma17g02436 319 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 213 260 IPR006511 -
Gma17g02436 319 Pfam Domain of unknown function (DUF702) 112 262 - -
Gma17g02436 319 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 317 - -
Gma17g02436 319 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Gma17g02436 319 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02436 Gma-Chr17 42323263 42326608 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gma17g02436 DUF702 8.8e-66 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02436 17 42323263 42326608 Gma06g00081 06 737531 738502 ECH
Gma17g02436 17 42323263 42326608 Gma11g01036 11 8782079 8783164 ECH
Gma17g02436 17 42323263 42326608 Gma12g00349 12 2877924 2879038 ECH
Gma17g02436 17 42323263 42326608 Gma17g02436 17 42323263 42326608 ECH
Gma17g02436 17 42323263 42326608 Gma14g02108 14 52194372 52196139 GST
Gma17g02436 17 42323263 42326608 Gma04g00260 04 2265079 2281599 PCT
Gma17g02436 17 42323263 42326608 Gma06g00081 06 737531 738502 PCT
Gma04g00260 04 2265079 2281599 Gma17g02436 17 42323263 42326608 PCT
Gma06g00081 06 737531 738502 Gma17g02436 17 42323263 42326608 PCT