Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02421 ATGACGGATGCTGCTGAAGACGCTACACGCCGCCGTAATGCGGTGGCCGAGTACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCGTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGATGATCTGAAGTCTCTTCAAAGCGTTGGACAGATCATTGGCGAAGTTCTTAGGCCTCTCGACAATGAACGCTTGATTGTTAAGGCAAGCAGCGGACCTAGGTATGTGGTTGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGGTACGAGAGTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGAAGTTGATCCAGTAGTTTACAATATGCTGCATGAGGATCCTGGTAATATCAGTTACTCTGCTGTTGGTGGTTTATCCGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTCAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTAGATAGAAAAATAGAAATTCCATTGCCAAATGAACAATCAAGGATGGAAATTCTCAAGATTCATGCTGCTGGGATTGCTAAGCACGGTGAAATAGATTATGAAGCTGTTGTGAAGCTTGCGGAGGGCTTTAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTACAGTGCTGATTTTGGCAAAGACTAA 1200 0.4367 MTDAAEDATRRRNAVAEYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNDAKKLESSAHYSADFGKD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02421 399 SMART AAA_5 172 311 IPR003593 -
Gma17g02421 399 Gene3D - 24 128 IPR012340 -
Gma17g02421 399 PANTHER BNAC02G30020D PROTEIN 5 395 - -
Gma17g02421 399 Pfam ATPase family associated with various cellular activities (AAA) 176 309 IPR003959 GO:0005524|GO:0016887
Gma17g02421 399 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 5 395 - -
Gma17g02421 399 Gene3D - 129 309 IPR027417 -
Gma17g02421 399 CDD AAA 142 309 - -
Gma17g02421 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 384 IPR027417 -
Gma17g02421 399 Pfam Proteasomal ATPase OB C-terminal domain 63 118 IPR032501 -
Gma17g02421 399 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 23 380 IPR005937 GO:0005737|GO:0030163|GO:0036402
Gma17g02421 399 Coils Coil 25 59 - -
Gma17g02421 399 ProSitePatterns AAA-protein family signature. 279 297 IPR003960 GO:0005524|GO:0016887
Gma17g02421 399 Gene3D - 310 380 - -
Gma17g02421 399 Pfam AAA+ lid domain 332 374 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02421 Gma-Chr17 42189676 42192998 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02421 17 42189676 42192998 Gma17g02421 17 42189676 42192998 ECH
Gma17g02421 17 42189676 42192998 Gma14g00612 14 5970606 5973820 GST