Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02411 ATGGATGCAACTTTTGCAACCCTGAATGCCAGTGCTAATCTAGTCACTAAGGGAATTGGATCTAGAAACAGAACTTCTTCTGGGTTCTGGGGTGAGAACACAAGGGGAAGTTTTAACATGAGATTTTGTAGTGTTCAATCACGCAAGAGTTTAAAAGCTACTACTTTCAAGCCTGGCTTTGCACAAGCTGTTTATTCACCAGACGTGAACAAAGAGCCACTGGTATTCCATGGACCCATTTTTCAGAATCCAAAAGCAAACCCAGAAAATGTAGCTGCTATCATATTGGGTGGAGGGGCTGGAACTCGACTCTTTCCTCTTACTAGCACAAGAGCTAAGCAAGCGGTTCCAATTGCAGGGTGTTACAGACTCATAGATATTCCTATGAGCAATTGCATCAACAGTGGCATCAGAAAAGTGTACGTTTTAACACAGTTCAACTCTTTCTCCCTCAATGGCCACTTGTCTCGCACTTACAATTTTGGAAATGGCGTGAACTTTGGAGGTGGTTTTGTGGAGGTCTTGGCTGCTACTAAAACTCCTGGAGAATCTGGGAACAAATGGTTCCAAGGGACAGCTGATGCAGTGAGACGATTTATCTGGGTTTTTGAGGATGCCAAGAACAAGGATATTGAGAACATATTGATAATTTCTGGTGATCATCTTTGCCGGATGGACTATATGAAGCTTCTGGAGAAACATATTGGGACAAATGCTGATATCACAGTTTCATGTGTGCCTATGGATGAAAGCCGTGCATCAGACTACGAGCTAATGAAAATTGATAGAAAGGGACAGATTACCCAGTTTGTAGAAAAACCAGAAGGATCAGATTTGCAGGCAATGCATGTTGATACCACTCTCCTAGGCTTAACTGCAGAAGAAGCACAGACATATCCTTACATTGCACCCATGGGTGTTTCTGTATTCAGAACTGAGACCCTGCTGAAACTGTTAAGATGGAGCTGTCCTTCTTGCAATGACTTTGGATCTGAAATTATCCCATCTGCTTTGAGGGACCACAAAGTCCAAGCATATATGTTCAGGGACTACTGGAAAGATATTGGAACTATAAAGTCCTTCTTTGAAGCCAATCTGGAACTAACAAAACAGTCTCCAAATTTTGAATTCTATGATCAAGAGACGCCTTTCTTCACTTCTCCAAGATTCCTACCACCCACTAAAGCAATAAAGTGCAAGATCATGGATGCAATTATTTCTCATGGTTGCTTCTTGAGTGAGAGTAGAGTTCAACATTCTATTGTTGGTGTGCGCTCACGTTTAGAGTCCGGTTCAGAGCTTCAGGATACCATGATGATGGGTGCTGACTACTATCAAACTGATTCTGAAATTGCAACTCTTCTGGAAGAAGGAAAGGTTCCAATAGGTGTTGGAGAGAATACTAGAATCAGGAATTGTATTATCGACAAGAATGCCAGGATAGGAAGAAATGTGATTATAGCCAATACTGATGGGGTTCAAGAAGCAGACAGGCCTGCGGAAGGATTCTACATTAGGTCCGGCATCGTAGTTGTAGTGAAGAATGCAACAATTGAAGATGGAACAGTCATTTGA 1575 0.4203 MDATFATLNASANLVTKGIGSRNRTSSGFWGENTRGSFNMRFCSVQSRKSLKATTFKPGFAQAVYSPDVNKEPLVFHGPIFQNPKANPENVAAIILGGGAGTRLFPLTSTRAKQAVPIAGCYRLIDIPMSNCINSGIRKVYVLTQFNSFSLNGHLSRTYNFGNGVNFGGGFVEVLAATKTPGESGNKWFQGTADAVRRFIWVFEDAKNKDIENILIISGDHLCRMDYMKLLEKHIGTNADITVSCVPMDESRASDYELMKIDRKGQITQFVEKPEGSDLQAMHVDTTLLGLTAEEAQTYPYIAPMGVSVFRTETLLKLLRWSCPSCNDFGSEIIPSALRDHKVQAYMFRDYWKDIGTIKSFFEANLELTKQSPNFEFYDQETPFFTSPRFLPPTKAIKCKIMDAIISHGCFLSESRVQHSIVGVRSRLESGSELQDTMMMGADYYQTDSEIATLLEEGKVPIGVGENTRIRNCIIDKNARIGRNVIIANTDGVQEADRPAEGFYIRSGIVVVVKNATIEDGTVI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02411 524 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 524 - -
Gma17g02411 524 CDD LbH_G1P_AT_C 392 518 - -
Gma17g02411 524 SUPERFAMILY Nucleotide-diphospho-sugar transferases 90 485 IPR029044 -
Gma17g02411 524 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 188 196 IPR005836 GO:0005978|GO:0008878
Gma17g02411 524 Gene3D Hexapeptide repeat proteins 390 524 - -
Gma17g02411 524 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 91 488 IPR011831 GO:0005978|GO:0008878
Gma17g02411 524 Pfam Nucleotidyl transferase 93 370 IPR005835 GO:0009058|GO:0016779
Gma17g02411 524 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 524 IPR011831 GO:0005978|GO:0008878
Gma17g02411 524 SUPERFAMILY Trimeric LpxA-like enzymes 387 524 IPR011004 -
Gma17g02411 524 CDD ADP_Glucose_PP 93 355 - -
Gma17g02411 524 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 81 389 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02411 Gma-Chr17 42103884 42108036 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02411 17 42103884 42108036 Gma17g02411 17 42103884 42108036 ECH
Gma17g02411 17 42103884 42108036 Gma14g00624 14 6091892 6096299 GST
Gma17g02411 17 42103884 42108036 Gma04g00286 04 2496611 2500994 PCT
Gma17g02411 17 42103884 42108036 Gma06g00272 06 2425373 2429462 PCT
Gma04g00286 04 2496611 2500994 Gma17g02411 17 42103884 42108036 PCT
Gma06g00272 06 2425373 2429462 Gma17g02411 17 42103884 42108036 PCT