Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02404 ATGCCATTCAGGAGCATTGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATTAGCAACATGTATAGAAGAGGTGGAGAAGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTTACCACCACCACCATCATCATCTTCTTCTTCTTCTTCATCTTCATCATGGCAGAGCCGGTGGGCTAATTTGCCACCCGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCTTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAAGTTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTTATCACTTTCCCCATATCACTAAAGCAGCCTGGTCCAAGAGACTCTCCAATCCAGTGTTTTATTAGGAGAGAAAGAATGACTTCAACATATTGTTTATATCTCGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTTTACTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTATAATATCATTGGTTTCCGATGATTTCTCTTGGGCTAGCAACACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTCACAATCTTGGATGGCGAGCCCGCGCATGAAACTTCACTTCCACTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCTAACAAGGTTGCTGCTGCTGCTAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTATGATGCACTTAATCCCCATATTTGCAATCCAAGAAGGAGGGAACGCCCCTACTCCTTTGAAGTTTACCACCAATTATCTTAATGATCATGCGTCTACCACCACCGAGCATGCATCTACCACCACACCAGACTCAAAAGGAAAGAAACCAGAAGTTGTTGAGTTTGACTCAACTGGCACTGCCAATACTCCAGAATCAATCCAGCGGGCAAGGGAACCATTGGTTTTGAAAAACAAAGCTCCTAGATGGCACGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1311 0.4477 MPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPPPPSSSSSSSSSSSWQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCKLWREITKDVVKTPEQCGFITFPISLKQPGPRDSPIQCFIRRERMTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLVSDDFSWASNTYVGKLRSNFLGTKFTILDGEPAHETSLPLNCKLQQRVHLKQVLPNKVAAAANYKVATVSYELNVLRTRGPRRMRCMMHLIPIFAIQEGGNAPTPLKFTTNYLNDHASTTTEHASTTTPDSKGKKPEVVEFDSTGTANTPESIQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02404 436 Pfam Tub family 125 431 IPR000007 -
Gma17g02404 436 Pfam F-box domain 64 111 IPR001810 GO:0005515
Gma17g02404 436 PANTHER TUBBY-RELATED 1 436 - -
Gma17g02404 436 SUPERFAMILY F-box domain 62 108 IPR036047 GO:0005515
Gma17g02404 436 ProSitePatterns Tub family signature 1. 364 377 IPR018066 -
Gma17g02404 436 Gene3D Tubby Protein; Chain A 123 436 IPR025659 -
Gma17g02404 436 ProSitePatterns Tub family signature 2. 421 436 IPR018066 -
Gma17g02404 436 MobiDBLite consensus disorder prediction 26 61 - -
Gma17g02404 436 Gene3D - 55 110 - -
Gma17g02404 436 SUPERFAMILY Tubby C-terminal domain-like 113 436 IPR025659 -
Gma17g02404 436 PRINTS Tubby superfamily signature 180 196 IPR000007 -
Gma17g02404 436 PRINTS Tubby superfamily signature 196 220 IPR000007 -
Gma17g02404 436 PRINTS Tubby superfamily signature 247 274 IPR000007 -
Gma17g02404 436 PRINTS Tubby superfamily signature 346 363 IPR000007 -
Gma17g02404 436 PRINTS Tubby superfamily signature 364 380 IPR000007 -
Gma17g02404 436 PRINTS Tubby superfamily signature 393 412 IPR000007 -
Gma17g02404 436 PRINTS Tubby superfamily signature 414 436 IPR000007 -
Gma17g02404 436 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 436 - -
Gma17g02404 436 MobiDBLite consensus disorder prediction 304 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02404 Gma-Chr17 42040331 42043729 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma17g02404 Tub 1.5e-101 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02404 17 42040331 42043729 Gma17g02404 17 42040331 42043729 ECH
Gma17g02404 17 42040331 42043729 Gma14g00632 14 6168126 6170930 GST