LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g02367	ATGGGTTGGCTCAGCAGAATTTTTAAAGGCTCAGACCATAATAAGCTTTCGGAAGGGCATTACTATAAAGAGGATGCGGGTTATTACTTGCCATCCACTTCGGGGGTAACAAATGATGCTTGGAACCAGAACCAGAACCAGAACGAGAATGAAGATATTGATCGTGCTATTGCGTTGTCTCTGGTGGAAGAGAGTCGGAGAGCAAACAACAATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACAACTTGCTAGAGCTATAGAACAAAGTCTAAATTTGGAGTCTCCTCCCAGATATGGAAACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTACGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTACTCATGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCACAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTAGATTCTTCTATCATGGATACTAATGAATGCCAACCCCTTCATGCCGATATACAAAGATTTTATGATAGCCTAAATATGAAACTGGACCAGCAAATTCCACTTCTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGAGAAGAATGGCCACTATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACTTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCGTACAGACCGACTACACGCTGCGATGTGACCGCAATTCTCGTTTTATATGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAATCTGAACTTTCTTCTGCATCAGGCAGCAACTTTGTATCAGCCTCATCCTCATCTGCATCACATACATCTAGAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAGGACCCTTCACCATATCAGGATGACAGGGACTTTTCCATATTAA	1437	0.4391	MGWLSRIFKGSDHNKLSEGHYYKEDAGYYLPSTSGVTNDAWNQNQNQNENEDIDRAIALSLVEESRRANNNVNDYRSQLEEDEQLARAIEQSLNLESPPRYGNENMYQPPIQYFPLGSRICAGCYTEIGFGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPTHEHDGTPRCCSCERMESQEAGYIALKDGRKLCLECLDSSIMDTNECQPLHADIQRFYDSLNMKLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTFSRRPRLGTAMDMRAQPYRPTTRCDVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIRMTGTFPY	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma17g02367	478	CDD	LIM_DA1	121	173	-	-
	Gma17g02367	478	Pfam	Protein DA1	271	473	IPR022087	-
	Gma17g02367	478	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	147	201	-	-
	Gma17g02367	478	ProSiteProfiles	Ubiquitin-interacting motif (UIM) domain profile.	80	99	IPR003903	-
	Gma17g02367	478	Gene3D	Cysteine Rich Protein	116	180	-	-
	Gma17g02367	478	PANTHER	PROTEIN DA1-LIKE	1	478	-	-
	Gma17g02367	478	PANTHER	PROTEIN DA1-RELATED 2	1	478	IPR045218	-
	Gma17g02367	478	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	114	146	-	-
	Gma17g02367	478	Pfam	Ubiquitin interaction motif	49	61	IPR003903	-
	Gma17g02367	478	Pfam	Ubiquitin interaction motif	80	93	IPR003903	-
	Gma17g02367	478	SMART	uim	48	67	IPR003903	-
	Gma17g02367	478	SMART	uim	80	99	IPR003903	-
	Gma17g02367	478	ProSitePatterns	LIM zinc-binding domain signature.	121	155	IPR001781	-
	Gma17g02367	478	Pfam	LIM domain	121	175	IPR001781	-
	Gma17g02367	478	Coils	Coil	65	92	-	-
	Gma17g02367	478	SMART	lim_4	120	172	IPR001781	-
	Gma17g02367	478	ProSiteProfiles	Ubiquitin-interacting motif (UIM) domain profile.	48	67	IPR003903	-
	Gma17g02367	478	ProSiteProfiles	LIM domain profile.	119	179	IPR001781	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g02367	Gma-Chr17	41726700	41734093	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Gma17g02367		DA1-like	3.1e-93	CL0126

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma17g02367	17	41726700	41734093	Gma17g02367	17	41726700	41734093	ECH
	Gma17g02367	17	41726700	41734093	Gma14g00671	14	6583054	6591222	GST