Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02349 ATGCCTCTTTCTCGCAAACCGCTTTCTCCGTCGACGTCCACCGGAGCCAAGCAAATCCCCGGCGGCGATTTTGCTCCGGCGCGGCGATTGACCAGGCAGAGGAAGCTCCGGCACCTCACTAACCAAGACACTGGCTTCTTCCATTCCGATGAGTTTTCGTTTCTTCCGGGTTCGCCGGAGTTTCGCTCCCACGGCGGTTCCGACCACCGGTCGTTCTCTGCTCTGCCGCAACCGCTGCCGCTGCCGCTTCCCGAAGCTCCGTTGACTCGTCGAGCAAAGTCAATCAGCTCCGGTTGCGTACATCGTCGTCGCCTTTCATCTTCGGTAGAACAAGATGGCTTTACTATTTCGAGGAACACAGTGTATCAAGATGCAGTGACAGTGAACAGTTTTAGCTTCAATCCGAAGATTGAAGAGGGATCTCAAAACCATAAATTTTTGTCCAGGGTGTGCCCTGAAAATAACCTTCTGGATTCACATCCCTTACCCCTTCCACCTAGAGCTTCATCACCAAAGCAATTATCTGTTGTGCTGCATCAATCAAGAATCAAGCATCACGCTACTGAAAATCTGCCTTCAGTGAAAGGTCGATGGCAGAAAGGAAAACTTATTGGACGTGGTACTTTTGGAAGTGTTTTTCATGCAACCAACATAGAAACTGGAGCCTCGTGTGCCATGAAGGAGATCAGTTTAATTGCTGATGATCCTACATATGCTGAGTGCATTAAACAACTGGAACAGGAAATCAAAATTCTCGGTCAACTACACCATCCCAACATAGTGCAGTATTATGGAAGTGAAACAGTTGGCAATCATTTGTACATATATATGGAGTATGTCTACCCGGGATCAATAAGTAAATTTTTGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATAAATCAGGCATTGTGAAGCTTGCAGATTTTGGGCTGGCGAAAATTCTAATGGGGAATTCATATGATCTTTCTTTTAAGGGTAGTTCTTATTGGATGGCTCCAGAGGTCGTGAAAGGTTCCATAAAGAACGAATCCAATCCTGATGTTGTCATGGCCATTGATATATGGACCTTAGGGTGCACCATTATAGAAATGTTGACAGGCAAACCTCCTTGGAGTGAAGTTGAAGGGCCTTCAGCCACGTTCAAGGTACTGCTAGAGTCCCCACCCATACCTGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTCTCCAAAGGGACCCTGCAGATCGACCATCTGCGGCAACGCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGGTCAAGGTGTTATAGTTCGTTCACAATCATATACAAGAGGAGACCTAGGACAAGGAGGTAATTCAGCTAGTCCTAGAGACACTACCAAAAATAGACGTGGCATAATGCAAGCCTCCAACAGCACACTTATTCTTAACAAAATTCAGAAATCAATCGGCAATGCTAAGGAGTCTCATCATATTAGACCTTACCATCACTCTCATGTTCCTGAAGTGAACATTCTTCAATCTTCATTGGAATCCAGCACCCTCAATTGCATGTCTGTTGCAAATTCCAGAAACGTTTCCACCGTCACGAGAATGATCACGAACTTCTGA 1707 0.4534 MPLSRKPLSPSTSTGAKQIPGGDFAPARRLTRQRKLRHLTNQDTGFFHSDEFSFLPGSPEFRSHGGSDHRSFSALPQPLPLPLPEAPLTRRAKSISSGCVHRRRLSSSVEQDGFTISRNTVYQDAVTVNSFSFNPKIEEGSQNHKFLSRVCPENNLLDSHPLPLPPRASSPKQLSVVLHQSRIKHHATENLPSVKGRWQKGKLIGRGTFGSVFHATNIETGASCAMKEISLIADDPTYAECIKQLEQEIKILGQLHHPNIVQYYGSETVGNHLYIYMEYVYPGSISKFLREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNKSGIVKLADFGLAKILMGNSYDLSFKGSSYWMAPEVVKGSIKNESNPDVVMAIDIWTLGCTIIEMLTGKPPWSEVEGPSATFKVLLESPPIPETLSSVGKDFLQQCLQRDPADRPSAATLLKHAFVQNLHGQGVIVRSQSYTRGDLGQGGNSASPRDTTKNRRGIMQASNSTLILNKIQKSIGNAKESHHIRPYHHSHVPEVNILQSSLESSTLNCMSVANSRNVSTVTRMITNF 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02349 568 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 124 563 - -
Gma17g02349 568 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 12 126 - -
Gma17g02349 568 MobiDBLite consensus disorder prediction 474 493 - -
Gma17g02349 568 Pfam Protein kinase domain 199 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02349 568 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 12 126 - -
Gma17g02349 568 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 124 563 - -
Gma17g02349 568 MobiDBLite consensus disorder prediction 59 78 - -
Gma17g02349 568 SMART serkin_6 198 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02349 568 ProSiteProfiles Protein kinase domain profile. 198 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g02349 568 MobiDBLite consensus disorder prediction 1 18 - -
Gma17g02349 568 Gene3D Transferase(Phosphotransferase) domain 1 188 531 - -
Gma17g02349 568 MobiDBLite consensus disorder prediction 1 26 - -
Gma17g02349 568 ProSitePatterns Protein kinases ATP-binding region signature. 204 227 IPR017441 GO:0005524
Gma17g02349 568 SUPERFAMILY Protein kinase-like (PK-like) 180 471 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02349 Gma-Chr17 41497961 41503006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02349 160 461 MAP Kinase Kinase Kinase AT5G66850 64.803 1.83e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma17g02349 Pkinase 1.6e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02349 17 41497961 41503006 Gma17g02349 17 41497961 41503006 ECH
Gma17g02349 17 41497961 41503006 Gma14g00691 14 6912346 6919105 GST
Gma17g02349 17 41497961 41503006 Gma04g00341 04 2916966 2923060 PCT
Gma17g02349 17 41497961 41503006 Gma06g00328 06 2845527 2851753 PCT
Gma04g00341 04 2916966 2923060 Gma17g02349 17 41497961 41503006 PCT
Gma06g00328 06 2845527 2851753 Gma17g02349 17 41497961 41503006 PCT