Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02348 ATGAACCTTACCCATTTCCCTCTCCATATATATAACTTCCCCGACAACCATCACTCTTCTAAGTGTCACACTCTAAAACACAAACAAACCCCAAAAAAAGAAAAGATGAAAGCAATGAAACGCTGCTCTTCATCATCTTCCTCTTCTTATTCTTCTGCTTCTGAGTCCACCCCACAAAGCAATCAAAATAAAAATAGTAATAACTTTTGCTACAAAATAAAAGGCCCATGGAGTGCCAAGGAGGATCGGATTCTGACCGGCCTCGTGGAGGCCCATGGCCCGAGAAACTGGGCCTCGATAAGCCGTCACATTAAGGGTCGGTCCGGGAAGTCCTGCCGGCTTCGGTGGTGTAACCAACTGAGTCCAACGGTGGAGCACCGACCCTTCTCCACGCGCGAGGACGAGGTTATATTACACGCGCACGCGCGGTTCGGGAACAAGTGGGCCACCATCGCGAGAATGCTACCGGGCCGAACCGACAATGCCGTCAAGAACCACTGGAACGCCACGCTCAAGCGGCGTCGTTTTGGTGCTGACGTGGTGGTGGAGGATGATCCGTTGACCGCGTTGACTCTGGCGCCGCCCGGGAGTGGTTGTTGTGGCCGTGGAGAGGAGCGGCGGGGAGTTTCGCCGGCGGGGTTTTGGGATGCGATGCGGGACGTGGTGGCGAGGGAAGTGAGAGGGTACGTGTCTTCCTCGTTTTCTGACAACTTGGCCTCTAATGAGGGATTATCCAAATATTAA 744 0.5323 MNLTHFPLHIYNFPDNHHSSKCHTLKHKQTPKKEKMKAMKRCSSSSSSSYSSASESTPQSNQNKNSNNFCYKIKGPWSAKEDRILTGLVEAHGPRNWASISRHIKGRSGKSCRLRWCNQLSPTVEHRPFSTREDEVILHAHARFGNKWATIARMLPGRTDNAVKNHWNATLKRRRFGADVVVEDDPLTALTLAPPGSGCCGRGEERRGVSPAGFWDAMRDVVAREVRGYVSSSFSDNLASNEGLSKY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02348 247 Pfam Myb-like DNA-binding domain 74 120 IPR001005 -
Gma17g02348 247 Pfam Myb-like DNA-binding domain 128 168 IPR001005 -
Gma17g02348 247 ProSiteProfiles Myb-like domain profile. 121 171 IPR001005 -
Gma17g02348 247 SMART sant 73 122 IPR001005 -
Gma17g02348 247 SMART sant 125 173 IPR001005 -
Gma17g02348 247 MobiDBLite consensus disorder prediction 21 35 - -
Gma17g02348 247 ProSiteProfiles Myb-like domain profile. 74 120 IPR001005 -
Gma17g02348 247 PANTHER MYB PROTEIN-RELATED 36 178 - -
Gma17g02348 247 PANTHER MYB PROTEIN-RELATED 181 226 - -
Gma17g02348 247 CDD SANT 128 171 IPR001005 -
Gma17g02348 247 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 36 178 - -
Gma17g02348 247 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 181 226 - -
Gma17g02348 247 MobiDBLite consensus disorder prediction 19 67 - -
Gma17g02348 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 175 IPR017930 -
Gma17g02348 247 Gene3D - 73 125 - -
Gma17g02348 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 124 IPR017930 -
Gma17g02348 247 Gene3D - 128 174 - -
Gma17g02348 247 MobiDBLite consensus disorder prediction 41 67 - -
Gma17g02348 247 CDD SANT 76 118 IPR001005 -
Gma17g02348 247 SUPERFAMILY Homeodomain-like 72 167 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02348 Gma-Chr17 41493510 41494396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02348 72 174 MYB Transcription Factor Family AT4G37260 73.786 6.48e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g02348 Myb_DNA-binding 5.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02348 17 41493510 41494396 Gma17g02348 17 41493510 41494396 ECH
Gma17g02348 17 41493510 41494396 Gma04g00344 04 2940278 2941338 PCT
Gma17g02348 17 41493510 41494396 Gma06g00331 06 2873111 2874149 PCT
Gma04g00344 04 2940278 2941338 Gma17g02348 17 41493510 41494396 PCT
Gma06g00331 06 2873111 2874149 Gma17g02348 17 41493510 41494396 PCT