Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02344 ATGCAGCAATCAAACGGCTCTGATTCGACGACTACGATGGAGCAGAGCGCGCCGCCGCCTCCGAGGCAATCACCGGCGGTGGCGAGGCCGCAGCAGTGGGTGCCGATGCAGTACCCTGCGGCGGCGGCGATGGTAATGCCGCACCACATGTTGCCGCCTCAGCATTATGCGCCGCCGCCGTACGTGCCTTACCACCACCAGTACGCGGCGCAGCCCCAGCACCAGCACCAGAACGGATCCGGCGGTGAGAACAAAACCATCTGGATCGGCGATTTGCATCATTGGATGGACGAAAACTATCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTTTGCAAAATTATGCTGGAATTTTGATGCCCAATGCTGAACAACCATTCCGTCTGAACTGGGCAACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGACAATGAGAGAACCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCTAGCAGGCCAATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGCCATCAACAGGGTGGGCTGTCAAATGGCACAGCCAACCAATCTGAAGCAGATTCTACTAACACAACTatatttgttggaggactggaccctaatgtttcagatgaagatctcaggcagccattctcccagtatggtgagatagtctctgttaagatacctgttggaaagggctgtggctttgtccaatttgCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAACGGTCCGTCTTTCTTGGGGTCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAGCCCTTGGACTGGGGCATATTACGGGGCCCCTATGTATGATGGTTATGGGTATGCATTGCCCCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGTGCTTACCCCCTTTATGGAGGCCACCAACAACAAGTAAGCTGA 1242 0.4477 MQQSNGSDSTTTMEQSAPPPPRQSPAVARPQQWVPMQYPAAAAMVMPHHMLPPQHYAPPPYVPYHHQYAAQPQHQHQNGSGGENKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNAEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGLSNGTANQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02344 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Gma17g02344 413 SMART rrm1_1 86 161 IPR000504 GO:0003723
Gma17g02344 413 SMART rrm1_1 284 351 IPR000504 GO:0003723
Gma17g02344 413 SMART rrm1_1 179 253 IPR000504 GO:0003723
Gma17g02344 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 355 IPR000504 GO:0003723
Gma17g02344 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 165 IPR000504 GO:0003723
Gma17g02344 413 SUPERFAMILY RNA-binding domain, RBD 162 271 IPR035979 GO:0003676
Gma17g02344 413 MobiDBLite consensus disorder prediction 258 289 - -
Gma17g02344 413 CDD RRM3_NGR1_NAM8_like 282 353 - -
Gma17g02344 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 249 IPR000504 GO:0003723
Gma17g02344 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 348 IPR000504 GO:0003723
Gma17g02344 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 153 IPR000504 GO:0003723
Gma17g02344 413 MobiDBLite consensus disorder prediction 1 28 - -
Gma17g02344 413 Gene3D - 84 164 IPR012677 -
Gma17g02344 413 Gene3D - 271 384 IPR012677 -
Gma17g02344 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 412 - -
Gma17g02344 413 CDD RRM2_SECp43_like 177 256 - -
Gma17g02344 413 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 25 412 - -
Gma17g02344 413 Gene3D - 166 270 IPR012677 -
Gma17g02344 413 SUPERFAMILY RNA-binding domain, RBD 44 166 IPR035979 GO:0003676
Gma17g02344 413 CDD RRM1_SECp43_like 86 166 - -
Gma17g02344 413 SUPERFAMILY RNA-binding domain, RBD 272 383 IPR035979 GO:0003676
Gma17g02344 413 MobiDBLite consensus disorder prediction 1 17 - -
Gma17g02344 413 MobiDBLite consensus disorder prediction 253 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02344 Gma-Chr17 41443049 41447808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02344 55 363 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 6.08e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02344 17 41443049 41447808 Gma17g02344 17 41443049 41447808 ECH
Gma17g02344 17 41443049 41447808 Gma14g00695 14 6977901 6981585 GST
Gma17g02344 17 41443049 41447808 Gma04g00348 04 2991053 2997140 PCT
Gma17g02344 17 41443049 41447808 Gma06g00336 06 2930572 2938615 PCT
Gma04g00348 04 2991053 2997140 Gma17g02344 17 41443049 41447808 PCT
Gma06g00336 06 2930572 2938615 Gma17g02344 17 41443049 41447808 PCT