Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02310 ATGGCTCTTCTACTGGACAACTGTGAAAGCATTTTGTTGTCTTTGGACACACACAAATCGGTTCCTGCACCTTTTCTTACAAAAACATACCAACTTGTAGAGGACCCTTCCACCGACCACATAGTCTCTTGGGGCGAAGGCGACACCACCTTCGTCGTTTGGAGACCCCCCGAATTCGCTAGGGACCTTCTCCCCAACTATTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGAAAGATTGTGCCTGATAGATGGGAGTTCGCGAATGAGTTCTTCAAGAAAGGAGCGAAGAACTTGCTGTGCGAGATCCACAGAAGGAAAACCCCTCACCAGCATCATCAAGAAGTACAAGCCATGAATAACCATCACCACCACTATCATCATCATCAGTTTGGACTCAACGTTCCTCCATTCTTTCCCTTCCACAATAGCAGACTCAGTATTTCCCCTCCTCATGACTCGGACGAGTTAATAATACCCAATTGGTGTGACTCGCCACCAAGAGGAGTTGCAAGTGTAaacaacaacaacaacaacaataacaactacaacaCTGTCACTGCACTTTCTGAGGACAACGAAAGACTTAGGAGAAGCAACAACATGCTCATGTCGGAGATCGAACACATGAAGAAGCTTTACAACGGCATTATCTACTTCGTTCAGAACCATGTCAAGCCCGTGGCTCCAAGCAACAACAACACTTTCCCTTCTTTTCTACTCTGCAGTAATAACATTAATAGCAATAGCAACAACAACACATCATCACAACCACAAGCCTCTCCTATGAGCAATGTTTCAACGGTGCAAAGGCAAGTGAAGCAATTTCTGGGGTGTTACTCCAACAACACAAAGCAAGCGCGTGCTGTGAACTCTTCTCCCACTAACAGTTCCATAACCATTGTTGAAGAAGAGGCTAGCAGTAACAGCTGCAAGACCAAGCTTTTTGGTGTGTCTCTCCAATCCAAGAAAAGGGTGCACCCTGATGAGTACGGATCTAACTATATTCTTCAAAGCTCCGAAACGAATAATAAGGCGCGTTTGGTTTTGGAAAATGATGAACTATTAGGCTTGAATCTTATGCCCCCTTCAACTTGTTAA 1125 0.4364 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVEDPSTDHIVSWGEGDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGAKNLLCEIHRRKTPHQHHQEVQAMNNHHHHYHHHQFGLNVPPFFPFHNSRLSISPPHDSDELIIPNWCDSPPRGVASVNNNNNNNNNYNTVTALSEDNERLRRSNNMLMSEIEHMKKLYNGIIYFVQNHVKPVAPSNNNTFPSFLLCSNNINSNSNNNTSSQPQASPMSNVSTVQRQVKQFLGCYSNNTKQARAVNSSPTNSSITIVEEEASSNSCKTKLFGVSLQSKKRVHPDEYGSNYILQSSETNNKARLVLENDELLGLNLMPPSTC 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02310 374 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02310 374 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02310 374 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02310 374 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02310 374 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gma17g02310 374 Gene3D - 17 116 IPR036388 -
Gma17g02310 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 241 IPR027725 -
Gma17g02310 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 276 373 IPR027725 -
Gma17g02310 374 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02310 374 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g02310 374 PANTHER BNAC06G00310D PROTEIN 276 373 - -
Gma17g02310 374 PANTHER BNAC06G00310D PROTEIN 12 241 - -
Gma17g02310 374 Coils Coil 194 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02310 Gma-Chr17 41107010 41108692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02310 1 373 HSF AT1G46264 51.399 3.92e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma17g02310 HSF_DNA-bind 1.6e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02310 17 41107010 41108692 Gma17g02310 17 41107010 41108692 ECH
Gma17g02310 17 41107010 41108692 Gma14g00730 14 7328232 7329864 GST
Gma17g02310 17 41107010 41108692 Gma04g00374 04 3197921 3199429 PCT
Gma17g02310 17 41107010 41108692 Gma06g00368 06 3140104 3141277 PCT
Gma04g00374 04 3197921 3199429 Gma17g02310 17 41107010 41108692 PCT
Gma06g00368 06 3140104 3141277 Gma17g02310 17 41107010 41108692 PCT