Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02308 ATGGCTGGTGACGTAGGAAGAGCCTTGCCTCCTCCTGATTCAGAAGAATTCTCAACCTTGTTCAGCCAACTCCTCCACAATTCTCCCCCACTAGGAATGGACCCCAATCATTCACCTCCTGATTTCACCCCACacaacaacaccatcgacatcaacatcaacaacaacatcatcaacaacaacaacaacaacaacCCTGTTCCTTCCTCTCCCTCAAATTTCAATTTCTCTGACCCCCATCATTACATCCCTGCCTCTGATGCCACCACCTTTAAACAACACACCCCTGATTTCACTTCTTTTTCTGTTGAGAAGAGTGTGGAGGCATCGAAACCTGTCCCACCACCACGTTCTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGGACTAAGACCTATGATAATGTCTCAGACTGGATTGAACCTTGATGGGAGTAATGGATTTCATAATTCTACCAGTGCAATTGCCTCATCTTCAAATGATGAAAGCTTAGTGCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAAATCAGTCTATTGGTGTACCCTCAGTGACAAACATAGCAACTTCGGATACCTCATCCACTTTTCATCCCTCTATTAAGGATGCACTCTACGGCAACATGCCACAACTGTTTATGGATACAACAACGATGGGAAAACCCTCTCCAGATGTGTCTTAA 894 0.4038 MAGDVGRALPPPDSEEFSTLFSQLLHNSPPLGMDPNHSPPDFTPHNNTIDININNNIINNNNNNNPVPSSPSNFNFSDPHHYIPASDATTFKQHTPDFTSFSVEKSVEASKPVPPPRSSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMIMSQTGLNLDGSNGFHNSTSAIASSSNDESLVRHAFSFPKQCSISNQSIGVPSVTNIATSDTSSTFHPSIKDALYGNMPQLFMDTTTMGKPSPDVS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02308 297 MobiDBLite consensus disorder prediction 123 137 - -
Gma17g02308 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Gma17g02308 297 MobiDBLite consensus disorder prediction 25 81 - -
Gma17g02308 297 Pfam Helix-loop-helix DNA-binding domain 129 175 IPR011598 GO:0046983
Gma17g02308 297 PANTHER TRANSCRIPTION FACTOR SPATULA 91 273 - -
Gma17g02308 297 MobiDBLite consensus disorder prediction 102 137 - -
Gma17g02308 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 185 IPR036638 GO:0046983
Gma17g02308 297 MobiDBLite consensus disorder prediction 40 79 - -
Gma17g02308 297 Gene3D - 120 184 IPR036638 GO:0046983
Gma17g02308 297 CDD bHLH_AtPIF_like 126 187 - -
Gma17g02308 297 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 91 273 IPR031066 -
Gma17g02308 297 SMART finulus 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02308 Gma-Chr17 41062921 41066217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02308 124 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 67.568 1.02e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g02308 HLH 3.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02308 17 41062921 41066217 Gma17g02308 17 41062921 41066217 ECH
Gma17g02308 17 41062921 41066217 Gma14g00733 14 7388571 7391642 GST