Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02307 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCCAGAAACCATAGAATTTGATTGTGGATCTACATCAAGTGCTGCTACAGTTGAACCACATATATTCTGGAATAATATGCGGAATCCTGCAGAAAATCAATTTGTACTTTCCCCCAGTGATATAAACCCATCTCACATGAATTCTATAAACAATGAATGGCAGAACTTGAGTGGATGGAGCATAGGCGAGCCAAGTTCCAGTAATACACAGAATGGGGTTGCCAACAATGAGCAGAAAAGAGAGCTAGGATTATTGTCTTCATTAAGTTCCGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAATCAAACAATGCCTTTTCATTGGACAACGTCAATACAAGTCCTATGCATATACGCAGCTCCAGTTCTCACTTGGTGCCACAGAACCTCAACTTAAACGCAAGTTTAGCCGATAGTGGTACTGATAACAGCTATCATGTGGAACGACCTCCTAGCTTGATCAAGTCTAGTGGACCGTTAAATGAGCATGTTGCACCAACAGTTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGAACTGCTAATGGCTTTTTAGGTGAGGAAACTGATGGTAGGCCAGGTTGTTCTCTAGACACCCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAACGAAATGTTGGACAATCTTCAGATGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGTACTTGGAACACTCTTCCTACTCAGGCTTATGGGGGGATCAGTTTTAACAGATCTGCCCCAACGGATCAGGTAAATGCGAGACTTGGCCTGAGTACAGGGGATGGATCCTCTGAAAGCATTCCTGTGTCAAATGTAGCAAGAAGCTCAGGAAGTTTCCACAGAAATTTTCGTCCGAGGACAAGTCCTTCAAGTCAACAAATTTCTGTTCCTCCCACTGCAATCTCAAGTGGGAATGTTATTAGGAGTTCTGGTGTTTCATCACCCTCTCCTATATTGCAACGATTTCATCCTGTTGATAATTCTTTTGACTTGAGGGCAGTGCCACCTGTTGATACTATGGTTCCTCAAAGTCAGCCCCTTGTTATTCATGTTCCTGCTTTACCAAGGAATGCACAGTCATTCAGGTGGAGTGGTGGTTCCAGTTCAACAAACAACCATTCCTCAAACTCAGTTATGTGTGCAGATAGAAATAATCTACCAAATGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTATAGAATACCCAATGTTTGTGCCTGCAACCAACTTAAGAAACGTTGTTCGGAATCCAGCTAGAACTTCAAATAATGCAAATTTAAGTATTCCAGGAAATGTTGGTTCTTCATCGCGGACAGGCTCAAATCCAGCTGTCAATCCACCACCTGCTTCGGCGTGGGTTTCTCGCCCTAATCCTCAGCAGTATCCGCGCAGATTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAATAGTTATACTCCCTTCCGTGGTCCTCCTACTTCATCTGAATCAAGGGGACTGTCATCTGGGGTAAACCCGTTCGAGAGGCAAGGTGATAGTGAATTTGGAATTCCATATTCGTTACAATCTTTGGTTGTTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTGCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTTGACCCTTCAGTGTTCTCTGGAATTGCTGATATTCatgatcgacacagggatatgcgacttgatgtggataacatgtcctatgagGAGCTATTGGCTCTGGAAGAACGCATTGGAAATGTGAGCACTGGATTAAGTGAGGAGATTGTATCGAAACTTTTGAAAAAGAAGAAGTATTCAGCTGAACCAGATTCTCAGCATGAGGCAGAACCATGCTGTGTTTGTCAGGAGGAGTATAAAGATGGGGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATAGAGATTGTATTAAACAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACCTGA 2100 0.4267 MQGQRGTIGSLPETIEFDCGSTSSAATVEPHIFWNNMRNPAENQFVLSPSDINPSHMNSINNEWQNLSGWSIGEPSSSNTQNGVANNEQKRELGLLSSLSSGAIAGPRLEERRFESNNAFSLDNVNTSPMHIRSSSSHLVPQNLNLNASLADSGTDNSYHVERPPSLIKSSGPLNEHVAPTVGSGPFLLPSGTANGFLGEETDGRPGCSLDTRRVSCKRKAVERNVGQSSDGGSSSYSQHTDGSTWNTLPTQAYGGISFNRSAPTDQVNARLGLSTGDGSSESIPVSNVARSSGSFHRNFRPRTSPSSQQISVPPTAISSGNVIRSSGVSSPSPILQRFHPVDNSFDLRAVPPVDTMVPQSQPLVIHVPALPRNAQSFRWSGGSSSTNNHSSNSVMCADRNNLPNEEASSRSMPRNIIEYPMFVPATNLRNVVRNPARTSNNANLSIPGNVGSSSRTGSNPAVNPPPASAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNSYTPFRGPPTSSESRGLSSGVNPFERQGDSEFGIPYSLQSLVVAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDPSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEIVSKLLKKKKYSAEPDSQHEAEPCCVCQEEYKDGDDLGSLDCGHDYHRDCIKQWLMHKNLCPICKTTGLAT 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02307 699 CDD RING-H2_TTC3 651 693 - -
Gma17g02307 699 ProSiteProfiles Zinc finger RING-type profile. 652 693 IPR001841 -
Gma17g02307 699 MobiDBLite consensus disorder prediction 227 249 - -
Gma17g02307 699 SUPERFAMILY RING/U-box 642 695 - -
Gma17g02307 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 698 IPR045191 GO:0061630
Gma17g02307 699 MobiDBLite consensus disorder prediction 269 333 - -
Gma17g02307 699 MobiDBLite consensus disorder prediction 437 466 - -
Gma17g02307 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 696 IPR013083 -
Gma17g02307 699 SMART ring_2 652 692 IPR001841 -
Gma17g02307 699 MobiDBLite consensus disorder prediction 437 478 - -
Gma17g02307 699 Pfam Ring finger domain 652 693 IPR001841 -
Gma17g02307 699 MobiDBLite consensus disorder prediction 219 249 - -
Gma17g02307 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 698 - -
Gma17g02307 699 MobiDBLite consensus disorder prediction 497 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02307 Gma-Chr17 41051574 41056759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02307 1 699 C3H Transcription Factor Family AT2G15530 32.493 3.08e-81 271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02307 17 41051574 41056759 Gma17g02307 17 41051574 41056759 ECH
Gma17g02307 17 41051574 41056759 Gma04g00375 04 3215459 3221761 PCT
Gma17g02307 17 41051574 41056759 Gma06g00369 06 3159395 3167037 PCT
Gma04g00375 04 3215459 3221761 Gma17g02307 17 41051574 41056759 PCT
Gma06g00369 06 3159395 3167037 Gma17g02307 17 41051574 41056759 PCT