Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02302 ATGATCACAACAACAAAGAAAAAAACGAGCAGAAGAAGTCCCACATCGGATAAGCTGAAGAATCAACACCCCTGTGAGAAGCAGGCGATGAAACCGTACAGAGGAATAAGGATGCGAAAGTGGGGGAAGTGGGTGGCGGAGATCAGAGAACCCAACAAGAGGTCGAGGATTTGGTTGGGTTCGTACACGACACCCATGGCCGCCGCACGCGCCTACGACACAGCCGTTTTCTACCTCCGAGGTCCCACCGCACGCCTTAACTTCCCCGAACTCTTGTTCCAGGACGACCAGGAGGAGGGCAATGATTCGGTGCAGCACGGTGCAGCAGCAGGGAACATGTCCGCTGATTCCATTCGCCGAAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCTCTCCAAACCGCGCTTCACCACCACGCGTCAAGTACCAACTCTCTCAAACCCGACTTGAACGAGTTTCCAAAACTCGAATCCCTTCAAGATTGA 486 0.5432 MITTTKKKTSRRSPTSDKLKNQHPCEKQAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPMAAARAYDTAVFYLRGPTARLNFPELLFQDDQEEGNDSVQHGAAAGNMSADSIRRKATQVGARVDALQTALHHHASSTNSLKPDLNEFPKLESLQD 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02302 161 MobiDBLite consensus disorder prediction 1 30 - -
Gma17g02302 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 159 - -
Gma17g02302 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 159 - -
Gma17g02302 161 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Gma17g02302 161 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Gma17g02302 161 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Gma17g02302 161 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Gma17g02302 161 MobiDBLite consensus disorder prediction 136 161 - -
Gma17g02302 161 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Gma17g02302 161 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Gma17g02302 161 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Gma17g02302 161 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Gma17g02302 161 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02302 Gma-Chr17 40983802 40984287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02302 27 160 AP2-EREBP Transcription Factor Family AT2G23340 58.955 1.22e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma17g02302 AP2 3.3e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02302 17 40983802 40984287 Gma17g02302 17 40983802 40984287 ECH
Gma17g02302 17 40983802 40984287 Gma14g00737 14 7466838 7468038 GST