Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02300 ATGAGTGGTGCGAATGAGAAAAACATGAAGAATTCTCTGTTTCTCCTCCACAATGCAAACACAATCCACTTCAATCTTCATTCCCAGATTACCCTTCCTTCCATTCCCCTCACAACAATTACAACTACCAAACCCTTCCCTCACAACCGTCACTTCCCACGCATCCAATGCTGCAGCAACAACAACAACAACAACAGCATCGAAATCGACATGGTGAAGAACAGCCAAGGAATCTACGCCCCCAAAGCCTCCAAGGTGGTCGTCCTCTGGGACCTCGACAACAAACCCCCCCGCGGCCCACCCTACGACGTCGCCATCTCCCTCAAAACCCTCGCCGCCCGCTTCGGCGACCTTGTCGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTCCAGCAACGCCGCGACCGCAAAAACCTCGACATCCTCGAACGAAAGGGAATCATCACCCCACCGGAGCCCTACACGTGCGGCGTGTGCGGGCGCAAGTGCAAGACCCACCTCGACCTAAAAAAACACTTCAAGCAGCTCCACCAGCGTGAGCGCCAGAAGAAGCTCAACCGTCTCAAGTCCTTGAAAGGAAAAAAACGGCACCGTTTCAAAGAACGTTTTTTGCGCGGGAACCATAAGTATGACGATGCGGCGAGGACGCTTGTAGTGCCCAAGGTCGGGTACGGGCTGGCGGCGGAGCTGAGGCGAGCGGGGGTGTTTGTGAAGACTGTGCAGGATAAGCCTCAGGCGGCGGATTGGGCCTTGAAGAGGCAAATGGTGCACTCGATGAGTAGAGGGATTGATTGGCTGTTTTTGGTTTCAGATGATTCGGATTTTTCGGAGATGTTGAGGAGGGCCAGGGAGGCGGATTTGGGGACCGTGGTGGTCGGGGATTGGGATAGGGCGCTCGGGCGCCACGCTGATTTGTGGGTGCCGTGGAGTGGGGTGGAGAATGGGGAGGTTGGTGATTTGGTGCCCAAGAGAAGAAGGGAGAATAGTAGGAGAAGAGAACAGGGAGAAGAACATGGTTTTGGTTTGGAAGATGATGATGATGATGATGGTGAGGATGAGGAATTGGGGCAAGAGTATATGTTGTTGTATGATGATGATGATGATGATGAAGGAGAAGAGGAAGATGGCTTATATATTTTTTGA 1167 0.5356 MSGANEKNMKNSLFLLHNANTIHFNLHSQITLPSIPLTTITTTKPFPHNRHFPRIQCCSNNNNNNSIEIDMVKNSQGIYAPKASKVVVLWDLDNKPPRGPPYDVAISLKTLAARFGDLVDFSAYANRHAFVHLPQWVLQQRRDRKNLDILERKGIITPPEPYTCGVCGRKCKTHLDLKKHFKQLHQRERQKKLNRLKSLKGKKRHRFKERFLRGNHKYDDAARTLVVPKVGYGLAAELRRAGVFVKTVQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGEVGDLVPKRRRENSRRREQGEEHGFGLEDDDDDDGEDEELGQEYMLLYDDDDDDEGEEEDGLYIF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02300 388 PANTHER - 56 369 - -
Gma17g02300 388 MobiDBLite consensus disorder prediction 348 388 - -
Gma17g02300 388 ProSitePatterns Zinc finger C2H2 type domain signature. 164 185 IPR013087 -
Gma17g02300 388 Coils Coil 182 202 - -
Gma17g02300 388 Gene3D - 80 318 - -
Gma17g02300 388 CDD PIN_LabA-like 172 302 - -
Gma17g02300 388 MobiDBLite consensus disorder prediction 333 347 - -
Gma17g02300 388 PANTHER OS06G0166200 PROTEIN 56 369 - -
Gma17g02300 388 MobiDBLite consensus disorder prediction 333 388 - -
Gma17g02300 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 190 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02300 Gma-Chr17 40965149 40966944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02300 14 388 C2H2 Transcription Factor Family AT5G52010 60.317 1.04e-156 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma17g02300 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02300 17 40965149 40966944 Gma17g02300 17 40965149 40966944 ECH
Gma17g02300 17 40965149 40966944 Gma14g00739 14 7494181 7495946 GST