Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02282 ATGGATCGGGTGAAGGGTCCATGGAGCCCAGAAGAGGACGAGGCTTTGCGGAGGCTGGTTCAGGCCCACGGGCCTCGAAACTGGTCGGTGATAAGCAAGTCCGTTCCGGGACGATCCGGGAAATCGTGCCGCTTACGGTGGTGCAACCAGCTCTCGCCGCAGGTGGCCCACCGCCCCTTCTCGCCGGACGAGGACGAGGCCATCGTCAGGGCTCACGCCAGGTTCGGCAACAAGTGGGCCACCATAGCTCGCCTTCTCAACAACGGCCGCACCGATAACGCCGTCAAAAACCACTGGAACTCCACTCTCAAGAGAAAAAAATGTTCCGCCGTTAGTGACGACGTCACCGATCGTCCGCCTCTTAAAAGATCTGCAAGCGTCGGCCCGGCCCATTTGAACCCTGGCAGCCCATCGGGCTCCGATTTGAGCGATCCGAGCCTGCCCGCTCTCTCAAACCCCTCCCCCTCGGCCCATTACAGGCCCAATCTCATGGAAACCGCTTCTTCTGCTTGCGATCCAGCCACGTCACTGAGTTTGTCTCTCCCCGGGTTCGGGTCCGGGTCTAACCCAGTTTGCGCACCTCGACCGGTATCGGTGTCTCCGCCGTCACCGCCTCCGGCGGAGCCGGTGGAGCAGCGGGGGAAGCAAATGTTCAACGCGGAGTTCTTGAGAGTGATGCAAGAGATGATAAGAAAGGAAGTGAGGAGTTACATGTCAGGGATGGAACAGAAGAATGGCTTCAGAATACCAACCGAAGCGATTGGGAACGCGGTGGTGAAGCGCATGGGAATTAGCAACATCGAGTGA 807 0.5911 MDRVKGPWSPEEDEALRRLVQAHGPRNWSVISKSVPGRSGKSCRLRWCNQLSPQVAHRPFSPDEDEAIVRAHARFGNKWATIARLLNNGRTDNAVKNHWNSTLKRKKCSAVSDDVTDRPPLKRSASVGPAHLNPGSPSGSDLSDPSLPALSNPSPSAHYRPNLMETASSACDPATSLSLSLPGFGSGSNPVCAPRPVSVSPPSPPPAEPVEQRGKQMFNAEFLRVMQEMIRKEVRSYMSGMEQKNGFRIPTEAIGNAVVKRMGISNIE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02282 268 MobiDBLite consensus disorder prediction 131 161 - -
Gma17g02282 268 Gene3D - 4 56 - -
Gma17g02282 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 107 IPR017930 -
Gma17g02282 268 SUPERFAMILY Homeodomain-like 2 99 IPR009057 -
Gma17g02282 268 CDD SANT 7 49 IPR001005 -
Gma17g02282 268 MobiDBLite consensus disorder prediction 105 161 - -
Gma17g02282 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Gma17g02282 268 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Gma17g02282 268 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Gma17g02282 268 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Gma17g02282 268 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Gma17g02282 268 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 238 - -
Gma17g02282 268 PANTHER MYB PROTEIN-RELATED 1 238 - -
Gma17g02282 268 SMART sant 56 105 IPR001005 -
Gma17g02282 268 SMART sant 4 53 IPR001005 -
Gma17g02282 268 Gene3D - 59 118 - -
Gma17g02282 268 CDD SANT 59 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02282 Gma-Chr17 40739284 40741017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02282 2 268 MYB Transcription Factor Family AT5G67300 52.787 1.35e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g02282 Myb_DNA-binding 1.9e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02282 17 40739284 40741017 Gma17g02282 17 40739284 40741017 ECH
Gma17g02282 17 40739284 40741017 Gma14g00755 14 7763737 7765039 GST
Gma17g02282 17 40739284 40741017 Gma04g00399 04 3451108 3452140 PCT
Gma04g00399 04 3451108 3452140 Gma17g02282 17 40739284 40741017 PCT