Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02260 ATGGGAACGGAAGGCTACACTTACATGGGGCGCAGTTTGAGCGAACTCCGCATCAACGACGATTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACGCGGCGGTTTCTCATCGCCTGCGCCACCGAAAATTCCGACGACTTGATCCGCCAACTCGTCGCCGATCTCCACTCCTCCTCCATCGACGATCAGAAGCAAGCCGCCATGGAAATCCGATTACTCGCGAAGAACAAGCCGGAGAATCGCATCAAAATCGCGAAAGCCGGCGCAATCAAACCGCTAATTTCTCTCATTTCCTCGCCGGACCTTCAGCTCCAGGAATACGGCGTCACCGCGATTTTGAACCTCTCGCTCTGCGACGAGAACAAGGAGGTGATAGCCTCCTCAGGCGCGATCAAGCCGCTGGTtcgcgcgctgaacagtggaaccgccacggcgaaggagaacgcggcgtgcgcgcttctaagactctcgcaggtggaggagaacaaggcggcgatcgggcggtccggcgcgattccgcttcttgtgagcctcctggagagcggcgggttccgcgcgaagaaggacgcgtcgacggcgctgtactcgctgtgcacggtgaaggagaataagatcagagcggtgaaggcggggatcatgaaggtgctggtggagttgatggcggacttcgagtcgaacatggtggacaagtcggcgtacgtggtgagcgtgctggttgcggtgccggaggcgagggtggcgctggtggaagaaggaggcgtgccggtgctggtggagatcgtcgaggttgggacgcagaggcagaaggaaatcgcggtggttattcttttacagGTTTGCGAGGACAGCGTGACGTATCGCACCATGGTCGCTCGCGAAGGTGCGATTCCTCCTTTGGTCGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTAATTGAGCTTCTGCGGCAACCAAGGTCCGGCAACGGCGCTGCTCGAAGTACATCAGAAGTGGTGGCGTAG 1059 0.3362 MGTEGYTYMGRSLSELRINDDSSSSAFSDCNSDRSGEFATASSQTRRFLIACATENSDDLIRQLVADLHSSSIDDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEVIASSGAIKPLVRALNSGTATAKENAACALLRLSQVEENKAAIGRSGAIPLLVSLLESGGFRAKKDASTALYSLCTVKENKIRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVAVPEARVALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVTYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNGAARSTSEVVA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02260 352 Gene3D - 39 349 IPR011989 -
Gma17g02260 352 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 344 - -
Gma17g02260 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Gma17g02260 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Gma17g02260 352 SUPERFAMILY ARM repeat 58 331 IPR016024 -
Gma17g02260 352 PANTHER U BOX DOMAIN-CONTAINING 5 344 - -
Gma17g02260 352 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Gma17g02260 352 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Gma17g02260 352 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Gma17g02260 352 SMART arm_5 131 171 IPR000225 GO:0005515
Gma17g02260 352 SMART arm_5 213 253 IPR000225 GO:0005515
Gma17g02260 352 SMART arm_5 296 336 IPR000225 GO:0005515
Gma17g02260 352 SMART arm_5 172 212 IPR000225 GO:0005515
Gma17g02260 352 SMART arm_5 254 294 IPR000225 GO:0005515
Gma17g02260 352 SMART arm_5 90 130 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02260 Gma-Chr17 40461247 40463670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02260 11 341 U-box Gene Family AT2G23140 46.567 1.49e-86 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02260 17 40461247 40463670 Gma14g00779 14 8044265 8046357 GST
Gma17g02260 17 40461247 40463670 Gma06g00413 06 3543977 3545401 PCT
Gma06g00413 06 3543977 3545401 Gma17g02260 17 40461247 40463670 PCT