Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02256 ATGTTGTGTGCTTGTTCAGGCGAGCAATTCAAATTTGAAGAGGCGCCACCGCGGTCACCTGACTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGCCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAAACACAAGTGGAAGATGTTGAATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGTTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTTTTTGAGGGTATAGACATAAGGGCTTTGACCCCAAGGATGATAAGGGCTATAGCTGAAAGAACCAAACAAAGAAAATCACGTTCCAAGGTGGACAATGTGCTTCCTAATGTGATGTCAATGCATTCAGTTAGCCTGATTCTTGAGGCAATTTTGCTTAAATCTAAATCCTCTGAAGAACTTGGGCGATACACTGAGGCTGCAAAGGAGTGCAGAATTGTTGTGGATACAGTTGAGTCTGCTCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACGAAGCATTGGAGTTGCTTCCAAATCTATGGATGAAGGCAGGTTTGCTAGACGAAGTTGTCACTGCTTATCGGCGGGCTCTAGTCAAGCCTTGGAATTTGGAGCCGCAGAGGTTGGCCTGTGTACAAAAAGATTTAGCTACCACACTACTCTATGGAGGTGTTGAAGTAAACCTACTCCCTCAGTTGCAAGTGAATGGTATAACAACACCTATGAGCGGCACTGAAGAGGCTATACTTTTGCTATTAATACTCTCAGGAAAGATGGCACTTCAGGAAATAGATTGGGACCCTGAAATAATGGATCATCTTACATTTTCACTTTCAGTTACTGGGATGTTTGAATCATTGGCAGATCATGTAGAGAAGATCCTTCCGGGAGTTCATGATCGAGCTGAGCAGTGGTATTTTCTTGCTCTTTGTTACAGTGCAGCAGGACAGAATGAAGTAGCCTTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCATAGACCCCATTTTCCTTCATTTTTGTTTGGTGCAAAGCTGTGTTCTCTAAATCCAAACCATGCTCGTGAAGGAATTAAATTTTCGCAGGAAGTTATTGATCTAGTGAAGCATCAAAATGAGCATTTTTTGAGTCAGGGCCAAAAATTTCTTGGCATTTGCCATGGAGCTGCTGCTAGAATATCTGTACTGGATTCTGAAAGAATTATATTTCAAAAAGAGTCTTTGAAGTTTCTAAAGGATGCTGCTCTGAATGGAAATAATAATGACCCGGAAGTGATGCTCACTCTTGGATTAGAAAATGCAATTCAAAGAAATCTAAATGCAGCTTATGACAATATAATGATGTACTCAGACATGATGGCTGGCAGCTCAAGAAGAGGTTGGCAGCTGTTAGCACTAACAGTATCAGCACAGCAGCGGTTTCAGGATGCCGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGCGATATAGATCAGTTAGAACTACTGAGACTGAAAGCTGTACTTCAAATTACTCAGCAGCAACCCAAGCAAGCAATTGAGACCTACAGAATCTTGCTAGCTGTAATTGAAGCAAGAAAAGAGCATTGGCTTCAAGCTAAGACATTCAGGCACGAGGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTTGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAATCCCAGTCGATAGAATTTTTTTCTCCCAGAAGTTGGCACATCACTGGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTCTCAGTTTCATTGTCAATAGAACCAGATTACATTCCCTGTATCATCTCCACTGCAAAATTGTTTCTTAAACTTGGCATTCCATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGACCCCACAAACCATGATGCATGGTTTAACCTTGGATTGGTTTCAAAAATGGAAGGCTCGTTACAACAAGCGGCAGACTGCTTTCAAGCTGCATATGAGCTGAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTGA 2136 0.4176 MLCACSGEQFKFEEAPPRSPDSLATRDFSASGLSSRTGDWESKFDETQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFEGIDIRALTPRMIRAIAERTKQRKSRSKVDNVLPNVMSMHSVSLILEAILLKSKSSEELGRYTEAAKECRIVVDTVESALPNGMPEGIGEDCKLQEMFHEALELLPNLWMKAGLLDEVVTAYRRALVKPWNLEPQRLACVQKDLATTLLYGGVEVNLLPQLQVNGITTPMSGTEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSVTGMFESLADHVEKILPGVHDRAEQWYFLALCYSAAGQNEVALNLLRKACGSSEAKHRPHFPSFLFGAKLCSLNPNHAREGIKFSQEVIDLVKHQNEHFLSQGQKFLGICHGAAARISVLDSERIIFQKESLKFLKDAALNGNNNDPEVMLTLGLENAIQRNLNAAYDNIMMYSDMMAGSSRRGWQLLALTVSAQQRFQDAETIVDFALDEAGDIDQLELLRLKAVLQITQQQPKQAIETYRILLAVIEARKEHWLQAKTFRHEALTEQKLEMEAWQDLATIYADLCSFLDAKACVDKSQSIEFFSPRSWHITGLLFEAQSLHKEAFVSFSVSLSIEPDYIPCIISTAKLFLKLGIPSLPIARSFLMNALRLDPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKFE 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02256 711 Coils Coil 57 77 - -
Gma17g02256 711 Gene3D Tetratricopeptide repeat domain 274 595 IPR011990 GO:0005515
Gma17g02256 711 ProSiteProfiles TPR repeat profile. 672 705 IPR019734 GO:0005515
Gma17g02256 711 Gene3D Tetratricopeptide repeat domain 27 249 IPR011990 GO:0005515
Gma17g02256 711 SUPERFAMILY TPR-like 432 597 IPR011990 GO:0005515
Gma17g02256 711 PANTHER PROTEIN NPGR1 1 710 - -
Gma17g02256 711 SUPERFAMILY TPR-like 54 345 IPR011990 GO:0005515
Gma17g02256 711 MobiDBLite consensus disorder prediction 24 38 - -
Gma17g02256 711 SUPERFAMILY TPR-like 570 702 IPR011990 GO:0005515
Gma17g02256 711 SMART tpr_5 602 635 IPR019734 GO:0005515
Gma17g02256 711 SMART tpr_5 318 351 IPR019734 GO:0005515
Gma17g02256 711 SMART tpr_5 672 705 IPR019734 GO:0005515
Gma17g02256 711 SMART tpr_5 513 546 IPR019734 GO:0005515
Gma17g02256 711 SMART tpr_5 568 601 IPR019734 GO:0005515
Gma17g02256 711 PANTHER PROTEIN NPG1 1 710 IPR043376 -
Gma17g02256 711 MobiDBLite consensus disorder prediction 12 39 - -
Gma17g02256 711 Gene3D Tetratricopeptide repeat domain 596 701 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02256 Gma-Chr17 40404499 40409353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02256 1 710 Calmodulin-binding Proteins AT1G27460 58.683 0.0 839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02256 17 40404499 40409353 Gma17g02256 17 40404499 40409353 ECH
Gma17g02256 17 40404499 40409353 Gma14g00782 14 8116418 8119436 GST
Gma17g02256 17 40404499 40409353 Gma04g00428 04 3719509 3723129 PCT
Gma17g02256 17 40404499 40409353 Gma06g00419 06 3587798 3592154 PCT
Gma04g00428 04 3719509 3723129 Gma17g02256 17 40404499 40409353 PCT
Gma06g00419 06 3587798 3592154 Gma17g02256 17 40404499 40409353 PCT