Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02253 ATGGCATTTGCAGGAACAACACAGAAGTGTATGGCCTGTGACAAAACCGTTTATCTGGTTGATAAGTTGACCGCGGATAACCGAGTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTTGACCAACTGTTCAAAAGAACAGGGAGCCTTGACAAAAGCTTTGAAGGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAACACCACCATGTCCAATTGATCAAGGAGAAGGGCAATTTAAGCCAACTTGAAGGTGACAATGAGAAGAGTGCAACTAATGGGAAAATCAATGGTGAAGAAGTTGCCACGGAGACATGA 591 0.4382 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKNLEEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDNEKSATNGKINGEEVATET 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02253 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gma17g02253 196 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 183 - -
Gma17g02253 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Gma17g02253 196 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Gma17g02253 196 MobiDBLite consensus disorder prediction 175 196 - -
Gma17g02253 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gma17g02253 196 CDD LIM2_SF3 109 169 - -
Gma17g02253 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Gma17g02253 196 Gene3D Cysteine Rich Protein 4 74 - -
Gma17g02253 196 Gene3D Cysteine Rich Protein 104 173 - -
Gma17g02253 196 MobiDBLite consensus disorder prediction 173 196 - -
Gma17g02253 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gma17g02253 196 Pfam LIM domain 10 64 IPR001781 -
Gma17g02253 196 Pfam LIM domain 109 163 IPR001781 -
Gma17g02253 196 CDD LIM1_SF3 6 68 - -
Gma17g02253 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gma17g02253 196 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Gma17g02253 196 SMART lim_4 9 61 IPR001781 -
Gma17g02253 196 SMART lim_4 108 160 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02253 Gma-Chr17 40387129 40389128 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma17g02253 LIM 1.7e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02253 17 40387129 40389128 Gma17g02253 17 40387129 40389128 ECH
Gma17g02253 17 40387129 40389128 Gma14g00786 14 8147284 8148736 GST
Gma17g02253 17 40387129 40389128 Gma04g00433 04 3746178 3750497 PCT
Gma17g02253 17 40387129 40389128 Gma06g00423 06 3608178 3610688 PCT
Gma04g00433 04 3746178 3750497 Gma17g02253 17 40387129 40389128 PCT
Gma06g00423 06 3608178 3610688 Gma17g02253 17 40387129 40389128 PCT