Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01138 ATGTATTCCTCAAATACCTTCCTCAACGGCAATGACCTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTTATAATTTTTCAAAAGAAGAAGCCAATTCCAATTACGCCCTTCCTCCTCCTCCACCTCCTCCTCCTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCTAGAACACCACCACCATGACTTGCTCCTACTTCATCAGTACTCTCTGACTGACTCTGGAGTATCAAAAAACCTTGAAGTTGTGGCCGAAATCTCGCCAATTCCTTGCCCTGAACAAGGTGGAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGACCGCCACAGCAAGATCAACACCGCGAGAGGCCTCAGGGATCGAAGAATGAGGCTGTCCCTCGAAGTCGCGAAGCGGTTTTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGAGTGGTTACTGAACCAAGCAAAGGGTGAAATCAAACAACTTGCAAGGGAAAAAACAAGTGTTGTTGGTGGTGGTGGCAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGCAGTGAGTACTGGAGGAGTTAATAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGATGAAGAGAAGAAAAAGTAAGGTTTGTAGAAAGAGTGCATTCAATGCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGGGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGTTTCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACACATCATCCCTCCTTGGATGTGCACCTTCATGAGGCTGATCAAGAACCAATTAGTTCTCACAACGTGAAGGAGCATAATTTGGGAGAGGACATGGCGCATGAAGATAATTCTTTGGCGCTCATGAACAAGTGGAGCCCAACTATGTTGTTCAATTCTCTTCACAACTCAGGAATCCTTCAGGAACATCAATTCGCAGAATTTCAGTCCTTGGGGAAACAATGGGAAGCCTACAGCAATCAAATCTGA 1143 0.4567 MYSSNTFLNGNDLISYPNQPFCFRPFSFESNPTYNFSKEEANSNYALPPPPPPPPLSFFQSPFDENIFLEHHHHDLLLLHQYSLTDSGVSKNLEVVAEISPIPCPEQGGIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKGEIKQLAREKTSVVGGGGKSASSTSECEGVSSLDEVAVSTGGVNNEEQERETVPNMMKRRKSKVCRKSAFNAIDKESREKARERARERTREKMRTRRVLVSDASNLNRLSSWNPFETVEDSAGTTHHPSLDVHLHEADQEPISSHNVKEHNLGEDMAHEDNSLALMNKWSPTMLFNSLHNSGILQEHQFAEFQSLGKQWEAYSNQI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01138 380 ProSiteProfiles R domain profile. 249 266 IPR017888 -
Gma17g01138 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 351 IPR005333 GO:0003700
Gma17g01138 380 MobiDBLite consensus disorder prediction 190 204 - -
Gma17g01138 380 ProSiteProfiles TCP domain profile. 122 180 IPR017887 -
Gma17g01138 380 PANTHER TRANSCRIPTION FACTOR TCP18 14 351 - -
Gma17g01138 380 MobiDBLite consensus disorder prediction 106 127 - -
Gma17g01138 380 Pfam TCP family transcription factor 121 269 IPR017887 -
Gma17g01138 380 MobiDBLite consensus disorder prediction 187 206 - -
Gma17g01138 380 MobiDBLite consensus disorder prediction 212 239 - -
Gma17g01138 380 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01138 Gma-Chr17 9888355 9889863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01138 118 263 TCP Transcription Factor Family AT3G18550 45.912 6.84e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma17g01138 TCP 1.7e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00126 05 1269972 1271469 Gma17g01138 17 9888355 9889863 ECH
Gma08g02386 08 23459544 23460769 Gma17g01138 17 9888355 9889863 ECH
Gma17g01138 17 9888355 9889863 Gma17g01138 17 9888355 9889863 ECH
Gma17g01138 17 9888355 9889863 Gma05g00126 05 1269972 1271469 GST