Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00839 ATGGGTTTTTCCTCTCTCCACGTCTGCATGGACTCATCAAATCACTGGATGCAGGGAATAATTCACGAGGAGTGTGGTGGGGTGGATTCTTCTTCACCCTCTGGCGACATGCTTCCATGCTCGAGGCCAATGACAGAGAGAAGGCTAAGACCCCCGCAAGAGCAATCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCCAGGTACTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGTGGTTGCAGAAAGAACAAGAAAGTTTCTACTAAGAAAATCATTAATGACCAACACCAACCAGCTATTAGTACTCAAAACCAAGTACACCACCCTGGACCCTCTTATCTTCATAATCACAAAGATCTTCAACTTCCCTACCTTGATGTGCAATTTTCTCACCTCAACAATTTGCTTGGGACTAATGCTGGTGCACTTGGAAACCCTACTTTTATGGAGAGTAAGTATAACATGGGCATGCTTGAGAACCCTAGGCCTATTGACTTCATGGAAAGCAGGTTGGATGGTATGAATATGATTAGGGGTTCCACTAGGAGTTTTGAGCTTCTTGAAAATAGTGATATGACTGTTGGGTTTGGTGATGTGAGTGGCTACAATGGATCGCCATTGAATTATCAAGCTATTTCCTCTTCAGCATTTGGAGGTATGTCCCTTGATGGAAACATTAGCAATGTTGGAACTTATATAATGGACTCTTGCCAGCGACTTATGTTGCCCTATGATGGAGGTGACAACACccttaatggttcaattgatgtgaagccaaaccctaagctgttgtcccttgaatggcaagatcatcagggttgctctggtgctgaaaaagtgtcattgggatatcttgatggatcagggtcatcatggaccggctatggatcttccacaacaaaccctttggtctag 993 0.3716 MGFSSLHVCMDSSNHWMQGIIHEECGGVDSSSPSGDMLPCSRPMTERRLRPPQEQSLKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKIINDQHQPAISTQNQVHHPGPSYLHNHKDLQLPYLDVQFSHLNNLLGTNAGALGNPTFMESKYNMGMLENPRPIDFMESRLDGMNMIRGSTRSFELLENSDMTVGFGDVSGYNGSPLNYQAISSSAFGGMSLDGNISNVGTYIMDSCQRLMLPYDGGDNTLNGSIDVKPNPKLLSLEWQDHQGCSGAEKVSLGYLDGSGSSWTGYGSSTTNPLV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00839 330 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Gma17g00839 330 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Gma17g00839 330 PANTHER - 22 321 - -
Gma17g00839 330 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Gma17g00839 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 321 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00839 Gma-Chr17 7089162 7091156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00839 1 298 C2C2-Dof Transcription Factor Family AT5G62940 44.109 1.33e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma17g00839 zf-Dof 7.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00839 - - gmx:100783782 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00839 17 7089162 7091156 Gma05g00359 05 3368554 3370676 GST
Gma17g00839 17 7089162 7091156 Gma04g01780 04 47637376 47639456 PCT
Gma17g00839 17 7089162 7091156 Gma06g01623 06 15982131 15984041 PCT
Gma04g01780 04 47637376 47639456 Gma17g00839 17 7089162 7091156 PCT
Gma06g01623 06 15982131 15984041 Gma17g00839 17 7089162 7091156 PCT