Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01328 ATGCCGTCGTCGAATTCCGGCGAGAGCCGCCGAGCGAGCAAGCCGCATCGATCGGTGGCGGCGCCGCCGGTCGAGCCAGAGAACCTCCCCTGCCCGCGGTGCGACTCCGCCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCCGTCGGCGGAGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACGCCGCCGCCGCCACATCGTCGTCCTCCTCCACCTCCTCCGCCACGACGTCAGCGCACGAACACCACAACGCGCACACGTTAACCGCATTGGCTCCCGTTACCGCCGCCACGCACTTCGGACATGACGGCGACGTCAAACAGACTAACGGTAACGCTTGCGGGAGCTACACTTCGTTGCTGAACAACACCCAGGGCTCCGGGTTTTTCGCCCTCGGTGGGTTTGGGCTTGGGCTTGGACACGGGTTTGACGACATGGGCTTTGGCATTGGGAGGTCGGGCTGGGCATTCCCCGGAATGGTGGACAATGGCAACATTGGCGGCGCCATTGCGTCTTCTGGAGTCAACACGTGGCAGTTAGAGAGTGGCGAAGGTGGGTTCGTTGGCGGAGATTGCTTCTCTTGGCCTGGGCTTGCGATTTCAACACCGGGAAATGGTCTCAAATGA 711 0.6301 MPSSNSGESRRASKPHRSVAAPPVEPENLPCPRCDSANTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHAAAATSSSSSTSSATTSAHEHHNAHTLTALAPVTAATHFGHDGDVKQTNGNACGSYTSLLNNTQGSGFFALGGFGLGLGHGFDDMGFGIGRSGWAFPGMVDNGNIGGAIASSGVNTWQLESGEGGFVGGDCFSWPGLAISTPGNGLK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01328 236 MobiDBLite consensus disorder prediction 1 30 - -
Gma16g01328 236 MobiDBLite consensus disorder prediction 70 112 - -
Gma16g01328 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 233 IPR045174 GO:0003700|GO:0006355
Gma16g01328 236 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Gma16g01328 236 MobiDBLite consensus disorder prediction 88 112 - -
Gma16g01328 236 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Gma16g01328 236 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 233 - -
Gma16g01328 236 Pfam Dof domain, zinc finger 28 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01328 Gma-Chr16 32165046 32166179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01328 1 236 C2C2-Dof Transcription Factor Family AT3G50410 48.062 1.39e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma16g01328 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01328 - - gmx:778099 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01328 16 32165046 32166179 Gma02g00567 02 5691138 5691842 ECH
Gma16g01328 16 32165046 32166179 Gma16g01328 16 32165046 32166179 ECH
Gma16g01328 16 32165046 32166179 Gma02g00567 02 5691138 5691842 GST